| Literature DB >> 29473128 |
Jan Strehlow1, Nadine Spahr2, Jan Rühaak2, Hendrik Laue3, Nasreddin Abolmaali4, Tobias Preusser3,5, Andrea Schenk3.
Abstract
PURPOSE: Annotation of meaningful landmark ground truth on DCE-MRI is difficult and laborious. Motion correction methods applied to DCE-MRI of the liver are thus mostly evaluated using qualitative or indirect measures. We propose a novel landmark annotation scheme that facilitates the generation of landmark ground truth on larger clinical datasets.Entities:
Keywords: Evaluation; Image registration; Liver; MRI; Motion correction
Mesh:
Year: 2018 PMID: 29473128 PMCID: PMC5880871 DOI: 10.1007/s11548-018-1710-1
Source DB: PubMed Journal: Int J Comput Assist Radiol Surg ISSN: 1861-6410 Impact factor: 2.924
Fig. 1Schematic of the proposed annotation scheme for DCE-MRI datasets with multiple time point (horizontal direction) and multiple cases (vertical direction). One time point of the DCE-MRI series is selected as the fixed image. To account for varying feature-visibility, landmarks are annotated for pairs of fixed and moving image individually. In a first step, each annotator sets a small number of L landmarks on half of the pairs. Subsequently, the pairs are switched and the annotators re-annotate the other annotator’s fixed image landmarks
Fig. 2Screenshot of the in-house annotation tool used to define and find the landmarks. Fixed and moving images are displayed in separate rows and in three main directions. The user can switch between different zoom factors (zoom factor 4 shown). Once a landmark is defined in both images the user can overlay a local region around the moving image landmark in the fixed image (red overlay). The user can adjust the region size (bottom toolbar) as well as the windowing of the images and the overlay. The user can also perform a registration of the local region within the fixed image (button “snap local”)
Fig. 3Steps of the liver segmentation. A mean intensity projection of all time points (a) is multiplied by a linear ramp (b) to give an image with high values within the liver region (c). On a threshold of this image (d) we subsequently compute a morphological opening (e) and the convex hull (f). The resulting mask is dilated again to include surrounding anatomy (g)
Fig. 5Time cut images (TCI) of three anterior–posterior lines of an exemplary case (a) before motion correction (b) after motion correction with the full method (c) and after motion correction without preregistration (d). The blue lines in (a) indicate the positions at which the TCI are calculated. The green and gray arrows point to structures that are temporally more consistent after motion compensation (green: blood vessel, gray: liver surface). The full method was rated as improving the temporal consistency in this case. The blue arrows in (c) and (d) mark a time point where the reduced method did not perform as well as the full method. The result of the reduced method was thus rated worse than the one of the full method for this case
Statistics of the extent of the bounding box around all fixed image landmarks and average extents of the normal liver as reported in [7]
| Direction | Mean (mm) | Min (mm) | Max (mm) | Normal liver extent from [ |
|---|---|---|---|---|
| Left–right | 154.6 | 56.8 | 263.4 | 200–255 |
| Craniocaudal | 116.9 | 29.7 | 200.8 | 150–175 |
| Anterior–posterior | 120.5 | 52.0 | 220.5 | 100–125 |
Fig. 4Median landmark distances (mm) for different parameter combinations in a broad (left) and a focused (right) search range. Foldings occurred in parameter combinations below the red line. Note that the contours are interpolated in between the sampled positions and that the scales of the two contour plots differ
Statistics for LD after registration for our full method with optimal parameters (FMopt), the full method with empirically motivated parameters (FMemp), two reduced versions, one without masking the distance measure of preregistration (RMwom) to the coarse liver segmentation and one without preregistration (RMwop) and before registration
| Method | Mean | Median | Min | q75% | q90% | q99% | Max | Foldings |
|---|---|---|---|---|---|---|---|---|
| FMopt | 2.00 | 1.33 | 0.12 | 2.77 | 4.43 | 9.92 | 13.68 | 0 |
| FMemp | 2.10 | 1.45 | 0.08 | 2.76 | 4.57 | 9.31 | 17.49 | 0 |
| RMwom | 2.28 | 1.34 | 0.08 | 2.81 | 4.67 | 20.72 | 27.48 | 0 |
| RMwop | 2.24 | 1.37 | 0.06 | 2.84 | 4.73 | 14.36 | 24.73 | 0 |
| Before reg. | 10.23 | 8.42 | 1.10 | 14.22 | 23.82 | 28.66 | 31.91 | – |
All values are given in mm