| Literature DB >> 29472936 |
Jose M Soriano1, Dolors Villegas1, Mark E Sorrells2, Conxita Royo1.
Abstract
Genetic diversity of durum wheat landraces is a powerful tool for the introgression of new alleles of commercial interest in breeding programs. In a previous study, our team structured a collection of 172 durum wheat landraces from 21 Mediterranean countries in four genetic populations related to their geographical origin: east Mediterranean (17), east Balkan and Turkey (23), west Balkan and Egypt (25), and West Mediterranean (73), leaving 34 genotypes as admixed, and association mapping was carried out for important agronomic traits. Using a subset of this collection, the current study identified 23 marker alleles with a differential frequency in landraces from east and west regions of the Mediterranean Basin, which affected important agronomic traits. Eastern landraces had higher frequencies than the western ones of alleles increasing the number of spikes (wPt-5385 on chromosome 1B), grains per m2 (wPt-0841 on chromosome 7B), and grain filling duration (7 significant marker trait associations). Eastern landraces had higher frequencies of marker alleles located on chromosomes 4A, 5B, and 6B associated with reduced cycle length, and lighter grains than the western ones. Also for lower kernel weight, four marker alleles were located on chromosome 1A. Breeders may use the molecular markers identified in the current study for improving yield under specific Mediterranean environments.Entities:
Keywords: Mediterranean basin; association mapping; cycle length; marker assisted selection; yield components
Year: 2018 PMID: 29472936 PMCID: PMC5809869 DOI: 10.3389/fpls.2018.00080
Source DB: PubMed Journal: Front Plant Sci ISSN: 1664-462X Impact factor: 5.753
Figure 1(A) Graphical genotyping for the selected eastern and western Mediterranean durum wheat landraces. Shown are the country of origin of the landraces, the membership coefficient (q) of the subpopulation (SP, EM = East Mediterranean, WM = West Mediterranean) of each landrace as reported by Soriano et al. (2016). Alleles present on each landrace are indicated by colors: Blue, west; red, east; white, not determined. (B) Map of the Mediterranean Basin highlighting the countries of origin of the landraces, indicating the number of landraces from each country.
Environmental details for the six field experiments.
| Environment code | GR07 | GR08 | GR09 | LL07 | LL08 | LL09 |
| Site | Granada | Granada | Granada | Lleida | Lleida | Lleida |
| Year | 2007 | 2008 | 2009 | 2007 | 2008 | 2009 |
| Soil texture | Silty clay | Clay-loamy | Loamy | Sandy-clay-loamy | ||
| Sowing date (dd/mm/yy) | 14/12/06 | 10/12/07 | 22/12/08 | 21/11/06 | 20/11/07 | 20/11/08 |
| Harvest date (dd/mm/yy) | 29/07/07 | 07/07/08 | 05/07/09 | 02/07/07 | 02/07/08 | 15/07/09 |
| Water input (mm) | 320 | 345 | 337 | 208 | 258 | 237 |
| Mean of daily minimum temperatures (°C) | 7.5 | 7.0 | 7.1 | 6.1 | 6.5 | 6.3 |
| Mean of daily maximum temperatures (°C) | 22.8 | 22.1 | 21.9 | 17.4 | 18.6 | 18.3 |
| Accumulated ET0 (mm) | 803 | 673 | 614 | 533 | 755 | 623 |
| Average daily relative air moisture (%) | 55.9 | 58.6 | 60.5 | 73.4 | 88.7 | 70.5 |
| Average daily solar radiation (MJ m−2 d−1) | 19.4 | 18.4 | 17.8 | 14.5 | 14.9 | 15.9 |
| Days sowing to anthesis modern cultivars | 147 | 147 | 151 | 158 | 160 | 162 |
| Days sowing to anthesis WM landraces | 151 | 152 | 156 | 166 | 166 | 166 |
| Days sowing to anthesis EM landraces | 148 | 148 | 152 | 158 | 160 | 162 |
Days from sowing to anthesis were determined by Soriano et al. (.
Analysis of variance and mean values for yield components and phenology traits for landraces from east and west of the Mediterranean Basin.
| East Mediterranean | 312 | 441 | 7155 | 44 | 139 | 16 | 33 |
| West Mediterranean | 311 | 388 | 6236 | 50 | 143 | 17 | 31 |
| Numerator D.F. | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Denominator D.F. | 53 | 53 | 53 | 53 | 53 | 53 | 53 |
| 0.01 | 26.27 | 15.17 | 24.42 | 74.56 | 46.68 | 21.14 | |
| 0.9377 | <0.0001 | 0.0003 | <0.0001 | <0.0001 | 0.0002 | <0.0001 |
Data on first two rows are means across six environments. Yield, grain yield (g m.
Regression equations for the contribution of main yield components to yield formation in eastern and western Mediterranean landraces.
| East Mediterranean | NGm2: 0.84 | 0.84 | <0.0001 | |
| TKW: 0.13 | 0.97 | <0.0001 | ||
| West Mediterranean | NGm2: 0.54 | 0.54 | <0.0001 | |
| TKW: 0.44 | 0.98 | <0.0001 |
NGm.
Marker trait associations showing differential phenotypic effects on yield components and plant phenology in landraces from east and west of the Mediterranean Basin.
| NSm2 | wPt-5385 | 1B | 20.6 | SM | 3.3 | 14 | 93 (E) | 449 | 384 | 28.0 (<0.0001) |
| NGm2 | wPt-0841 | 7B | 116.3 | S8 | 3.0 | 647 | 100 (E) | 7005 | 6150 | 14.4 (0.0004) |
| NGm2 | wPt-2356 | 7B | 160.7 | N7/NM | 4.3/3.4 | 373/262 | 79 (E) | 6904 | 6222 | 9.3 (0.0035) |
| NGm2 | wPt-5092 | 7A | 2.2 | N8 | 3.2 | 326 | 63 (W) | 6607 | 6317 | 1.5 (0.22) |
| NGm2 | wPt-2389 | 1B | 42.9 | N7 | 3.1 | −355 | 66 (W) | 6669 | 6292 | 2.7 (0.10) |
| NGm2 | wPt-6842 | 7A | 138.6 | N7 | 3.2 | −384 | 66 (W) | 6767 | 6204 | 6.0 (0.018) |
| TKW | wPt-7418 | 5B | U | N8 | 3.7 | −1.9 | 93 (E) | 45 | 51 | 21.5 (<0.0001) |
| TKW | wPt-0011 | 1A | U | SM | 3.1 | −1.4 | 93 (E) | 45 | 51 | 33.3 (<0.0001) |
| TKW | wPt-8882 | 1A | U | SM | 3.7 | −1.4 | 100 (E) | 45 | 51 | 29.7 (<0.0001) |
| TKW | wPt-6530 | 1A | U | SM | 3.4 | −1.3 | 100 (E) | 45 | 51 | 29.9 (<0.0001) |
| TKW | wPt-8838 | 1A | U | SM | 3.2 | −1.3 | 100 (E) | 45 | 51 | 29.7 (<0.0001) |
| TKW | wPt-3451 | 1B | 43.9 | NM | 3.0 | 1.5 | 66 (W) | 45 | 51 | 35.1 (<0.0001) |
| DSB | wPt-7846 | 6B | 60.3 | N8/NM | 4/3.5 | −1.4/−1.2 | 93 (E) | 140 | 143 | 31.9 (<0.0001) |
| DSB | wPt-11589 | 6B | 83.6 | S7/SM | 4.6 | −1/−1 | 86 (E) | 140 | 143 | 31.8 (<0.0001) |
| DBA | wPt-9059 | 4A | 136.8 | N7 | 3.9 | −0.6 | 86 (E) | 16 | 17 | 15.8 (0.0002) |
| DBA | wPt-6692 | 5B | 25.6 | N8/NM | 3.1/3.2 | −0.5/−0.4 | 93 (E) | 16 | 17 | 15.0 (0.0003) |
| GFD | wPt-0980 | 7B | 117.6 | N8 | 3.1 | 1.1 | 93 (E) | 33 | 31 | 16.3 (0.0002) |
| GFD | wPt-7975 | 7B | 3.6 | NM | 3.6 | 1.0 | 79 (E) | 33 | 31 | 16.7 (0.0002) |
| GFD | wPt-5846 | 7B | 3.6 | NM | 3.6 | 1.0 | 79 (E) | 33 | 31 | 16.7 (0.0002) |
| GFD | wPt-0983 | 1B | −7.9 | S8 | 3.5 | 0.8 | 93 (E) | 33 | 31 | 11.8 (0.0012) |
| GFD | wPt-5513 | 2B | 45.2 | N8 | 3.2 | 0.8 | 100 (E) | 32 | 31 | 4.5 (0.038) |
| GFD | wPt-5788 | 2B | 45.3 | N8 | 3.0 | 0.8 | 100 (E) | 32 | 31 | 5.0 (0.029) |
| GFD | tPt-4216 | N | U | N9 | 3.8 | 0.7 | 71 (E) | 33 | 31 | 15.4 (0.0003) |
NSm.
U, Unmapped.
Environments: N7, North 2007; N8, North 2008; N9, North 2009; NM, North mean; S7, South 2007; S8, South 2008; SM, South mean.
Allele effect calculated with GenStat v18. Units of the effect are in accordance with those reported for each trait.
Frequency of the genotypes carrying the allele conferring the show effect. In parenthesis, E, east Mediterranean; W, west Mediterranean.
Mean comparisons among the presence of the east (E)/west (W) allele for each one of the analyzed traits.
Figure 2Marker allele frequencies specific to landraces from east and west of the Mediterranean Basin for the analyzed traits. All the significant markers shown in Table 2 and Figure 1 are included. NSm2, number of spikes per m2; NGm2, number of grains per m2; TKW, thousand grain weight (g); DSB, days from sowing to booting; DBA, days from booting to anthesis; GFD, grain filling duration (days).