Literature DB >> 29466914

Inducible CRISPR genome editing platform in naive human embryonic stem cells reveals JARID2 function in self-renewal.

Amy Ferreccio1,2, Julie Mathieu1,2,3, Damien Detraux1,2, Logeshwaran Somasundaram1,2, Christopher Cavanaugh2,3, Bryce Sopher4, Karin Fischer1,2, Thomas Bello2,5, Abdiasis M Hussein1,2, Shiri Levy1,2, Savannah Cook2,3, Sonia B Sidhu1,2, Filippo Artoni1,2, Nathan J Palpant2,6, Hans Reinecke2,6, Yuliang Wang2,7, Patrick Paddison2,8, Charles Murry2,6,9,10,11, Suman Jayadev4, Carol Ware2,3, Hannele Ruohola-Baker1,2,5,10.   

Abstract

To easily edit the genome of naïve human embryonic stem cells (hESC), we introduced a dual cassette encoding an inducible Cas9 into the AAVS1 site of naïve hESC (iCas9). The iCas9 line retained karyotypic stability, expression of pluripotency markers, differentiation potential, and stability in 5iLA and EPS pluripotency conditions. The iCas9 line induced efficient homology-directed repair (HDR) and non-homologous end joining (NHEJ) based mutations through CRISPR-Cas9 system. We utilized the iCas9 line to study the epigenetic regulator, PRC2 in early human pluripotency. The PRC2 requirement distinguishes between early pluripotency stages, however, what regulates PRC2 activity in these stages is not understood. We show reduced H3K27me3 and pluripotency markers in JARID2 2iL-I-F hESC mutants, indicating JARID2 requirement in maintenance of hESC 2iL-I-F state. These data suggest that JARID2 regulates PRC2 in 2iL-I-F state and the lack of PRC2 function in 5iLA state may be due to lack of sufficient JARID2 protein.

Entities:  

Keywords:  CRISPR-Cas9; Human embryonic stem cells; JARID2; PRC2; PSEN2; epigenetics; genome editing; naïve hESC

Mesh:

Substances:

Year:  2018        PMID: 29466914      PMCID: PMC5969550          DOI: 10.1080/15384101.2018.1442621

Source DB:  PubMed          Journal:  Cell Cycle        ISSN: 1551-4005            Impact factor:   4.534


  63 in total

1.  PRC2 complexes with JARID2, MTF2, and esPRC2p48 in ES cells to modulate ES cell pluripotency and somatic cell reprogramming.

Authors:  Zhuo Zhang; Amanda Jones; Chiao-Wang Sun; Chao Li; Chia-Wei Chang; Heui-Yun Joo; Qian Dai; Matthew R Mysliwiec; Li-Chen Wu; Yahong Guo; Wei Yang; Kaimao Liu; Kevin M Pawlik; Hediye Erdjument-Bromage; Paul Tempst; Youngsook Lee; Jinrong Min; Tim M Townes; Hengbin Wang
Journal:  Stem Cells       Date:  2011-02       Impact factor: 6.277

Review 2.  Role of PRC2-associated factors in stem cells and disease.

Authors:  Pedro Vizán; Malte Beringer; Cecilia Ballaré; Luciano Di Croce
Journal:  FEBS J       Date:  2014-10-25       Impact factor: 5.542

Review 3.  Roles of jumonji and jumonji family genes in chromatin regulation and development.

Authors:  Takashi Takeuchi; Yutaka Watanabe; Toshiyuki Takano-Shimizu; Shunzo Kondo
Journal:  Dev Dyn       Date:  2006-09       Impact factor: 3.780

4.  Derivation of Pluripotent Stem Cells with In Vivo Embryonic and Extraembryonic Potency.

Authors:  Yang Yang; Bei Liu; Jun Xu; Jinlin Wang; Jun Wu; Cheng Shi; Yaxing Xu; Jiebin Dong; Chengyan Wang; Weifeng Lai; Jialiang Zhu; Liang Xiong; Dicong Zhu; Xiang Li; Weifeng Yang; Takayoshi Yamauchi; Atsushi Sugawara; Zhongwei Li; Fangyuan Sun; Xiangyun Li; Chen Li; Aibin He; Yaqin Du; Ting Wang; Chaoran Zhao; Haibo Li; Xiaochun Chi; Hongquan Zhang; Yifang Liu; Cheng Li; Shuguang Duo; Ming Yin; Huan Shen; Juan Carlos Izpisua Belmonte; Hongkui Deng
Journal:  Cell       Date:  2017-04-06       Impact factor: 41.582

5.  Jarid2/Jumonji coordinates control of PRC2 enzymatic activity and target gene occupancy in pluripotent cells.

Authors:  Jamy C Peng; Anton Valouev; Tomek Swigut; Junmei Zhang; Yingming Zhao; Arend Sidow; Joanna Wysocka
Journal:  Cell       Date:  2009-12-24       Impact factor: 41.582

Review 6.  Alzheimer's disease in a dish: promises and challenges of human stem cell models.

Authors:  Jessica E Young; Lawrence S B Goldstein
Journal:  Hum Mol Genet       Date:  2012-08-02       Impact factor: 6.150

7.  Derivation of naive human embryonic stem cells.

Authors:  Carol B Ware; Angelique M Nelson; Brigham Mecham; Jennifer Hesson; Wenyu Zhou; Erica C Jonlin; Antonio J Jimenez-Caliani; Xinxian Deng; Christopher Cavanaugh; Savannah Cook; Paul J Tesar; Jeffrey Okada; Lilyana Margaretha; Henrik Sperber; Michael Choi; C Anthony Blau; Piper M Treuting; R David Hawkins; Vincenzo Cirulli; Hannele Ruohola-Baker
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-12       Impact factor: 11.205

8.  Optimized inducible shRNA and CRISPR/Cas9 platforms for in vitro studies of human development using hPSCs.

Authors:  Alessandro Bertero; Matthias Pawlowski; Daniel Ortmann; Kirsten Snijders; Loukia Yiangou; Miguel Cardoso de Brito; Stephanie Brown; William G Bernard; James D Cooper; Elisa Giacomelli; Laure Gambardella; Nicholas R F Hannan; Dharini Iyer; Fotios Sampaziotis; Felipe Serrano; Mariëlle C F Zonneveld; Sanjay Sinha; Mark Kotter; Ludovic Vallier
Journal:  Development       Date:  2016-12-01       Impact factor: 6.868

9.  Naive Pluripotent Stem Cells Derived Directly from Isolated Cells of the Human Inner Cell Mass.

Authors:  Ge Guo; Ferdinand von Meyenn; Fatima Santos; Yaoyao Chen; Wolf Reik; Paul Bertone; Austin Smith; Jennifer Nichols
Journal:  Stem Cell Reports       Date:  2016-03-03       Impact factor: 7.765

10.  Molecular Criteria for Defining the Naive Human Pluripotent State.

Authors:  Thorold W Theunissen; Marc Friedli; Yupeng He; Evarist Planet; Ryan C O'Neil; Styliani Markoulaki; Julien Pontis; Haoyi Wang; Alexandra Iouranova; Michaël Imbeault; Julien Duc; Malkiel A Cohen; Katherine J Wert; Rosa Castanon; Zhuzhu Zhang; Yanmei Huang; Joseph R Nery; Jesse Drotar; Tenzin Lungjangwa; Didier Trono; Joseph R Ecker; Rudolf Jaenisch
Journal:  Cell Stem Cell       Date:  2016-07-14       Impact factor: 25.269

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  5 in total

1.  Folliculin regulates mTORC1/2 and WNT pathways in early human pluripotency.

Authors:  J Mathieu; D Detraux; D Kuppers; Y Wang; C Cavanaugh; S Sidhu; S Levy; A M Robitaille; A Ferreccio; T Bottorff; A McAlister; L Somasundaram; F Artoni; S Battle; R D Hawkins; R T Moon; C B Ware; P J Paddison; H Ruohola-Baker
Journal:  Nat Commun       Date:  2019-02-07       Impact factor: 14.919

2.  microRNAs Regulating Human and Mouse Naïve Pluripotency.

Authors:  Yuliang Wang; Abdiasis M Hussein; Logeshwaran Somasundaram; Rithika Sankar; Damien Detraux; Julie Mathieu; Hannele Ruohola-Baker
Journal:  Int J Mol Sci       Date:  2019-11-22       Impact factor: 5.923

3.  dCas9 fusion to computer-designed PRC2 inhibitor reveals functional TATA box in distal promoter region.

Authors:  Shiri Levy; Logeshwaran Somasundaram; Infencia Xavier Raj; Diego Ic-Mex; Ashish Phal; Sven Schmidt; Weng I Ng; Daniel Mar; Justin Decarreau; Nicholas Moss; Ammar Alghadeer; Henrik Honkanen; Jay Sarthy; Nicholas Vitanza; R David Hawkins; Julie Mathieu; Yuliang Wang; David Baker; Karol Bomsztyk; Hannele Ruohola-Baker
Journal:  Cell Rep       Date:  2022-03-01       Impact factor: 9.995

Review 4.  Bilirubin-Induced Neurological Damage: Current and Emerging iPSC-Derived Brain Organoid Models.

Authors:  Abida Islam Pranty; Sara Shumka; James Adjaye
Journal:  Cells       Date:  2022-08-25       Impact factor: 7.666

5.  Suppression of unwanted CRISPR-Cas9 editing by co-administration of catalytically inactivating truncated guide RNAs.

Authors:  John C Rose; Nicholas A Popp; Christopher D Richardson; Jason J Stephany; Julie Mathieu; Cindy T Wei; Jacob E Corn; Dustin J Maly; Douglas M Fowler
Journal:  Nat Commun       Date:  2020-06-01       Impact factor: 14.919

  5 in total

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