Literature DB >> 29464330

The interplay of histone H2B ubiquitination with budding and fission yeast heterochromatin.

Alexis Zukowski1, Aaron M Johnson2.   

Abstract

Mono-ubiquitinated histone H2B (H2B-Ub) is important for chromatin regulation of transcription, chromatin assembly, and also influences heterochromatin. In this review, we discuss the effects of H2B-Ub from nucleosome to higher-order chromatin structure. We then assess what is currently known of the role of H2B-Ub in heterochromatic silencing in budding and fission yeasts (S. cerevisiae and S. pombe), which have distinct silencing mechanisms. In budding yeast, the SIR complex initiates heterochromatin assembly with the aid of a H2B-Ub deubiquitinase, Ubp10. In fission yeast, the RNAi-dependent pathway initiates heterochromatin in the context of low H2B-Ub. We examine how the different silencing machineries overcome the challenge of H2B-Ub chromatin and highlight the importance of using these microorganisms to further our understanding of H2B-Ub in heterochromatic silencing pathways.

Entities:  

Keywords:  Epigenetics; Heterochromatin; SIR complex; Silencing; Ubiquitination; Ubp10

Mesh:

Substances:

Year:  2018        PMID: 29464330      PMCID: PMC6039258          DOI: 10.1007/s00294-018-0812-1

Source DB:  PubMed          Journal:  Curr Genet        ISSN: 0172-8083            Impact factor:   3.886


  69 in total

1.  Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity.

Authors:  Huck Hui Ng; François Robert; Richard A Young; Kevin Struhl
Journal:  Mol Cell       Date:  2003-03       Impact factor: 17.970

2.  A dual role of H4K16 acetylation in the establishment of yeast silent chromatin.

Authors:  Mariano Oppikofer; Stephanie Kueng; Fabrizio Martino; Szabolcs Soeroes; Susan M Hancock; Jason W Chin; Wolfgang Fischle; Susan M Gasser
Journal:  EMBO J       Date:  2011-06-10       Impact factor: 11.598

Review 3.  Layers of DUB regulation.

Authors:  Danny D Sahtoe; Titia K Sixma
Journal:  Trends Biochem Sci       Date:  2015-06-11       Impact factor: 13.807

4.  Rad6-dependent ubiquitination of histone H2B in yeast.

Authors:  K Robzyk; J Recht; M A Osley
Journal:  Science       Date:  2000-01-21       Impact factor: 47.728

5.  Histone H2B ubiquitylation controls processive methylation but not monomethylation by Dot1 and Set1.

Authors:  Mona D Shahbazian; Kangling Zhang; Michael Grunstein
Journal:  Mol Cell       Date:  2005-07-22       Impact factor: 17.970

6.  Lysine-79 of histone H3 is hypomethylated at silenced loci in yeast and mammalian cells: a potential mechanism for position-effect variegation.

Authors:  Huck Hui Ng; David N Ciccone; Katrina B Morshead; Marjorie A Oettinger; Kevin Struhl
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-06       Impact factor: 11.205

7.  Ubiquitination of histone H2B regulates H3 methylation and gene silencing in yeast.

Authors:  Zu-Wen Sun; C David Allis
Journal:  Nature       Date:  2002-06-23       Impact factor: 49.962

8.  Histone H3 and H4 N-termini interact with SIR3 and SIR4 proteins: a molecular model for the formation of heterochromatin in yeast.

Authors:  A Hecht; T Laroche; S Strahl-Bolsinger; S M Gasser; M Grunstein
Journal:  Cell       Date:  1995-02-24       Impact factor: 41.582

9.  Reversal of PCNA ubiquitylation by Ubp10 in Saccharomyces cerevisiae.

Authors:  Alfonso Gallego-Sánchez; Sonia Andrés; Francisco Conde; Pedro A San-Segundo; Avelino Bueno
Journal:  PLoS Genet       Date:  2012-07-19       Impact factor: 5.917

10.  Competition between Heterochromatic Loci Allows the Abundance of the Silencing Protein, Sir4, to Regulate de novo Assembly of Heterochromatin.

Authors:  Michelle L Larin; Katherine Harding; Elizabeth C Williams; Noel Lianga; Carole Doré; Sophie Pilon; Éric Langis; Corey Yanofsky; Adam D Rudner
Journal:  PLoS Genet       Date:  2015-11-20       Impact factor: 5.917

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  6 in total

Review 1.  Epigenetic fates of gene silencing established by heterochromatin spreading in cell identity and genome stability.

Authors:  R A Greenstein; Bassem Al-Sady
Journal:  Curr Genet       Date:  2018-11-02       Impact factor: 3.886

Review 2.  Intricate regulation on epigenetic stability of the subtelomeric heterochromatin and the centromeric chromatin in fission yeast.

Authors:  Min Lu; Xiangwei He
Journal:  Curr Genet       Date:  2018-09-22       Impact factor: 3.886

3.  Proteomic profiling of yeast heterochromatin connects direct physical and genetic interactions.

Authors:  Alexis Zukowski; Juliana Phillips; Soyeon Park; Ronghu Wu; Steven P Gygi; Aaron M Johnson
Journal:  Curr Genet       Date:  2018-10-12       Impact factor: 2.695

Review 4.  The Paf1 Complex: A Keystone of Nuclear Regulation Operating at the Interface of Transcription and Chromatin.

Authors:  Alex M Francette; Sarah A Tripplehorn; Karen M Arndt
Journal:  J Mol Biol       Date:  2021-04-01       Impact factor: 6.151

Review 5.  Histone Modifications and the Maintenance of Telomere Integrity.

Authors:  Meagan Jezek; Erin M Green
Journal:  Cells       Date:  2019-02-25       Impact factor: 6.600

6.  Dot1 promotes H2B ubiquitination by a methyltransferase-independent mechanism.

Authors:  Tibor van Welsem; Tessy Korthout; Reggy Ekkebus; Dominique Morais; Thom M Molenaar; Kirsten van Harten; Deepani W Poramba-Liyanage; Su Ming Sun; Tineke L Lenstra; Rohith Srivas; Trey Ideker; Frank C P Holstege; Haico van Attikum; Farid El Oualid; Huib Ovaa; Iris J E Stulemeijer; Hanneke Vlaming; Fred van Leeuwen
Journal:  Nucleic Acids Res       Date:  2018-11-30       Impact factor: 16.971

  6 in total

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