Literature DB >> 29463904

Gut microbiota: Beyond metagenomics, metatranscriptomics illuminates microbiome functionality in IBD.

Aonghus Lavelle1, Harry Sokol2,3.   

Abstract

Mesh：

Year:  2018        PMID： 29463904     DOI： 10.1038/nrgastro.2018.15

Source DB:  PubMed          Journal:  Nat Rev Gastroenterol Hepatol        ISSN： 1759-5045            Impact factor:   46.802


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  9 in total

1.  Nociceptive and pro-inflammatory effects of dimethylallyl pyrophosphate via TRPV4 activation.

Authors:  S Bang; S Yoo; T J Yang; H Cho; S W Hwang
Journal:  Br J Pharmacol       Date:  2012-06       Impact factor: 8.739

2.  Relating the metatranscriptome and metagenome of the human gut.

Authors:  Eric A Franzosa; Xochitl C Morgan; Nicola Segata; Levi Waldron; Joshua Reyes; Ashlee M Earl; Georgia Giannoukos; Matthew R Boylan; Dawn Ciulla; Dirk Gevers; Jacques Izard; Wendy S Garrett; Andrew T Chan; Curtis Huttenhower
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-19       Impact factor: 11.205

3.  Population-level analysis of gut microbiome variation.

Authors:  Gwen Falony; Marie Joossens; Sara Vieira-Silva; Jun Wang; Youssef Darzi; Karoline Faust; Alexander Kurilshikov; Marc Jan Bonder; Mireia Valles-Colomer; Doris Vandeputte; Raul Y Tito; Samuel Chaffron; Leen Rymenans; Chloë Verspecht; Lise De Sutter; Gipsi Lima-Mendez; Kevin D'hoe; Karl Jonckheere; Daniel Homola; Roberto Garcia; Ettje F Tigchelaar; Linda Eeckhaudt; Jingyuan Fu; Liesbet Henckaerts; Alexandra Zhernakova; Cisca Wijmenga; Jeroen Raes
Journal:  Science       Date:  2016-04-28       Impact factor: 47.728

4.  Quantitative microbiome profiling links gut community variation to microbial load.

Authors:  Doris Vandeputte; Gunter Kathagen; Kevin D'hoe; Sara Vieira-Silva; Mireia Valles-Colomer; João Sabino; Jun Wang; Raul Y Tito; Lindsey De Commer; Youssef Darzi; Séverine Vermeire; Gwen Falony; Jeroen Raes
Journal:  Nature       Date:  2017-11-15       Impact factor: 49.962

5.  The treatment-naive microbiome in new-onset Crohn's disease.

Authors:  Subra Kugathasan; Lee A Denson; Dirk Gevers; Yoshiki Vázquez-Baeza; Will Van Treuren; Boyu Ren; Emma Schwager; Dan Knights; Se Jin Song; Moran Yassour; Xochitl C Morgan; Aleksandar D Kostic; Chengwei Luo; Antonio González; Daniel McDonald; Yael Haberman; Thomas Walters; Susan Baker; Joel Rosh; Michael Stephens; Melvin Heyman; James Markowitz; Robert Baldassano; Anne Griffiths; Francisco Sylvester; David Mack; Sandra Kim; Wallace Crandall; Jeffrey Hyams; Curtis Huttenhower; Rob Knight; Ramnik J Xavier
Journal:  Cell Host Microbe       Date:  2014-03-12       Impact factor: 21.023

6.  Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment.

Authors:  Xochitl C Morgan; Timothy L Tickle; Harry Sokol; Dirk Gevers; Kathryn L Devaney; Doyle V Ward; Joshua A Reyes; Samir A Shah; Neal LeLeiko; Scott B Snapper; Athos Bousvaros; Joshua Korzenik; Bruce E Sands; Ramnik J Xavier; Curtis Huttenhower
Journal:  Genome Biol       Date:  2012-04-16       Impact factor: 13.583

7.  Structure, function and diversity of the healthy human microbiome.

Authors: 
Journal:  Nature       Date:  2012-06-13       Impact factor: 49.962

8.  Dynamics of metatranscription in the inflammatory bowel disease gut microbiome.

Authors:  Melanie Schirmer; Eric A Franzosa; Jason Lloyd-Price; Lauren J McIver; Randall Schwager; Tiffany W Poon; Ashwin N Ananthakrishnan; Elizabeth Andrews; Gildardo Barron; Kathleen Lake; Mahadev Prasad; Jenny Sauk; Betsy Stevens; Robin G Wilson; Jonathan Braun; Lee A Denson; Subra Kugathasan; Dermot P B McGovern; Hera Vlamakis; Ramnik J Xavier; Curtis Huttenhower
Journal:  Nat Microbiol       Date:  2018-01-08       Impact factor: 17.745

9.  Genomic variation landscape of the human gut microbiome.

Authors:  Siegfried Schloissnig; Manimozhiyan Arumugam; Shinichi Sunagawa; Makedonka Mitreva; Julien Tap; Ana Zhu; Alison Waller; Daniel R Mende; Jens Roat Kultima; John Martin; Karthik Kota; Shamil R Sunyaev; George M Weinstock; Peer Bork
Journal:  Nature       Date:  2012-12-05       Impact factor: 49.962
  9 in total
  11 in total

Review 1.  Clean and Safe Drinking Water Systems via Metagenomics Data and Artificial Intelligence: State-of-the-Art and Future Perspective.

Authors:  Asala Mahajna; Inez J T Dinkla; Gert Jan W Euverink; Karel J Keesman; Bayu Jayawardhana
Journal:  Front Microbiol       Date:  2022-05-05       Impact factor: 6.064

2.  Infliximab Does Not Promote the Presence of Collagenolytic Bacteria in a Mouse Model of Colorectal Anastomosis.

Authors:  Sara Gaines; Sanjiv Hyoju; Ashley J Williamson; Jasper B van Praagh; Olga Zaborina; David T Rubin; John C Alverdy; Benjamin D Shogan; Neil Hyman
Journal:  J Gastrointest Surg       Date:  2020-01-02       Impact factor: 3.452

3.  Comparing Gut Microbiome in Mothers' Own Breast Milk- and Formula-Fed Moderate-Late Preterm Infants.

Authors:  Ziyi Wang; Achal Neupane; Richard Vo; Jessica White; Xiuqing Wang; Shin-Yi Lee Marzano
Journal:  Front Microbiol       Date:  2020-05-26       Impact factor: 5.640

Review 4.  Applying Genome-Resolved Metagenomics to Deconvolute the Halophilic Microbiome.

Authors:  Gherman Uritskiy; Jocelyne DiRuggiero
Journal:  Genes (Basel)       Date:  2019-03-14       Impact factor: 4.096

Review 5.  The application of omics techniques to understand the role of the gut microbiota in inflammatory bowel disease.

Authors:  Jonathan P Segal; Benjamin H Mullish; Mohammed Nabil Quraishi; Animesh Acharjee; Horace R T Williams; Tariq Iqbal; Ailsa L Hart; Julian R Marchesi
Journal:  Therap Adv Gastroenterol       Date:  2019-01-24       Impact factor: 4.409

Review 6.  A crash course in sequencing for a microbiologist.

Authors:  Aleksandra Kozińska; Paulina Seweryn; Izabela Sitkiewicz
Journal:  J Appl Genet       Date:  2019-01-25       Impact factor: 3.240

7.  Sample Preservation and Storage Significantly Impact Taxonomic and Functional Profiles in Metaproteomics Studies of the Human Gut Microbiome.

Authors:  Oskar Hickl; Anna Heintz-Buschart; Anke Trautwein-Schult; Rajna Hercog; Peer Bork; Paul Wilmes; Dörte Becher
Journal:  Microorganisms       Date:  2019-09-19

Review 8.  Integrating omics for a better understanding of Inflammatory Bowel Disease: a step towards personalized medicine.

Authors:  Manoj Kumar; Mathieu Garand; Souhaila Al Khodor
Journal:  J Transl Med       Date:  2019-12-13       Impact factor: 8.440

Review 9.  Role of Probiotics in the Management of COVID-19: A Computational Perspective.

Authors:  Quang Vo Nguyen; Li Chuin Chong; Yan-Yan Hor; Lee-Ching Lew; Irfan A Rather; Sy-Bing Choi
Journal:  Nutrients       Date:  2022-01-10       Impact factor: 6.706

Review 10.  The Gut Microbiota in Inflammatory Bowel Disease.

Authors:  Peng Qiu; Takatsugu Ishimoto; Lingfeng Fu; Jun Zhang; Zhenyong Zhang; Yang Liu
Journal:  Front Cell Infect Microbiol       Date:  2022-02-22       Impact factor: 5.293
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