Literature DB >> 29463761

Cooption of heat shock regulatory system for anhydrobiosis in the sleeping chironomid Polypedilum vanderplanki.

Pavel V Mazin1,2,3, Elena Shagimardanova4, Olga Kozlova4, Alexander Cherkasov4, Roman Sutormin5, Vita V Stepanova6,2, Alexey Stupnikov7, Maria Logacheva6,2,8, Aleksey Penin2,8,9, Yoichiro Sogame10,11,12, Richard Cornette10, Shoko Tokumoto13, Yugo Miyata10,14, Takahiro Kikawada15,13, Mikhail S Gelfand1,2,3,16, Oleg Gusev17,18,19.   

Abstract

Polypedilum vanderplanki is a striking and unique example of an insect that can survive almost complete desiccation. Its genome and a set of dehydration-rehydration transcriptomes, together with the genome of Polypedilum nubifer (a congeneric desiccation-sensitive midge), were recently released. Here, using published and newly generated datasets reflecting detailed transcriptome changes during anhydrobiosis, as well as a developmental series, we show that the TCTAGAA DNA motif, which closely resembles the binding motif of the Drosophila melanogaster heat shock transcription activator (Hsf), is significantly enriched in the promoter regions of desiccation-induced genes in P. vanderplanki, such as genes encoding late embryogenesis abundant (LEA) proteins, thioredoxins, or trehalose metabolism-related genes, but not in P. nubifer Unlike P. nubifer, P. vanderplanki has double TCTAGAA sites upstream of the Hsf gene itself, which is probably responsible for the stronger activation of Hsf in P. vanderplanki during desiccation compared with P. nubifer To confirm the role of Hsf in desiccation-induced gene activation, we used the Pv11 cell line, derived from P. vanderplanki embryo. After preincubation with trehalose, Pv11 cells can enter anhydrobiosis and survive desiccation. We showed that Hsf knockdown suppresses trehalose-induced activation of multiple predicted Hsf targets (including P. vanderplanki-specific LEA protein genes) and reduces the desiccation survival rate of Pv11 cells fivefold. Thus, cooption of the heat shock regulatory system has been an important evolutionary mechanism for adaptation to desiccation in P. vanderplanki.
Copyright © 2018 the Author(s). Published by PNAS.

Entities:  

Keywords:  Polypedilum vanderplanki; RNA-seq; anhydrobiosis; desiccation tolerance; heat shock

Mesh:

Substances:

Year:  2018        PMID: 29463761      PMCID: PMC5877948          DOI: 10.1073/pnas.1719493115

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  45 in total

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Authors:  W James Kent
Journal:  Genome Res       Date:  2002-04       Impact factor: 9.043

2.  Increase of internal ion concentration triggers trehalose synthesis associated with cryptobiosis in larvae of Polypedilum vanderplanki.

Authors:  Masahiko Watanabe; Takahiro Kikawada; Takashi Okuda
Journal:  J Exp Biol       Date:  2003-07       Impact factor: 3.312

3.  Continuous up-regulation of heat shock proteins in larvae, but not adults, of a polar insect.

Authors:  Joseph P Rinehart; Scott A L Hayward; Michael A Elnitsky; Luke H Sandro; Richard E Lee; David L Denlinger
Journal:  Proc Natl Acad Sci U S A       Date:  2006-09-12       Impact factor: 11.205

4.  The heat-shock transcription factor HSF1 is rapidly activated by either hyper- or hypo-osmotic stress in mammalian cells.

Authors:  L Caruccio; S Bae; A Y Liu; K Y Chen
Journal:  Biochem J       Date:  1997-10-15       Impact factor: 3.857

5.  Expression of heat shock protein-coding genes associated with anhydrobiosis in an African chironomid Polypedilum vanderplanki.

Authors:  Oleg Gusev; Richard Cornette; Takahiro Kikawada; Takashi Okuda
Journal:  Cell Stress Chaperones       Date:  2010-08-31       Impact factor: 3.667

6.  Anhydrobiosis-associated nuclear DNA damage and repair in the sleeping chironomid: linkage with radioresistance.

Authors:  Oleg Gusev; Yuichi Nakahara; Veronica Vanyagina; Ludmila Malutina; Richard Cornette; Tetsuya Sakashita; Nobuyuki Hamada; Takahiro Kikawada; Yasuhiko Kobayashi; Takashi Okuda
Journal:  PLoS One       Date:  2010-11-16       Impact factor: 3.240

7.  edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.

Authors:  Mark D Robinson; Davis J McCarthy; Gordon K Smyth
Journal:  Bioinformatics       Date:  2009-11-11       Impact factor: 6.937

8.  Widespread splicing changes in human brain development and aging.

Authors:  Pavel Mazin; Jieyi Xiong; Xiling Liu; Zheng Yan; Xiaoyu Zhang; Mingshuang Li; Liu He; Mehmet Somel; Yuan Yuan; Yi-Ping Phoebe Chen; Na Li; Yuhui Hu; Ning Fu; Zhibin Ning; Rong Zeng; Hongyi Yang; Wei Chen; Mikhail Gelfand; Philipp Khaitovich
Journal:  Mol Syst Biol       Date:  2013       Impact factor: 11.429

9.  The InterPro protein families database: the classification resource after 15 years.

Authors:  Alex Mitchell; Hsin-Yu Chang; Louise Daugherty; Matthew Fraser; Sarah Hunter; Rodrigo Lopez; Craig McAnulla; Conor McMenamin; Gift Nuka; Sebastien Pesseat; Amaia Sangrador-Vegas; Maxim Scheremetjew; Claudia Rato; Siew-Yit Yong; Alex Bateman; Marco Punta; Teresa K Attwood; Christian J A Sigrist; Nicole Redaschi; Catherine Rivoire; Ioannis Xenarios; Daniel Kahn; Dominique Guyot; Peer Bork; Ivica Letunic; Julian Gough; Matt Oates; Daniel Haft; Hongzhan Huang; Darren A Natale; Cathy H Wu; Christine Orengo; Ian Sillitoe; Huaiyu Mi; Paul D Thomas; Robert D Finn
Journal:  Nucleic Acids Res       Date:  2014-11-26       Impact factor: 16.971

10.  Gene expression during the life cycle of Drosophila melanogaster.

Authors:  Michelle N Arbeitman; Eileen E M Furlong; Farhad Imam; Eric Johnson; Brian H Null; Bruce S Baker; Mark A Krasnow; Matthew P Scott; Ronald W Davis; Kevin P White
Journal:  Science       Date:  2002-09-27       Impact factor: 47.728

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  14 in total

Review 1.  Deciphering the Biological Enigma-Genomic Evolution Underlying Anhydrobiosis in the Phylum Tardigrada and the Chironomid Polypedilum vanderplanki.

Authors:  Yuki Yoshida; Sae Tanaka
Journal:  Insects       Date:  2022-06-19       Impact factor: 3.139

2.  Recapitulation of the embryonic transcriptional program in holometabolous insect pupae.

Authors:  Alexandra M Ozerova; Mikhail S Gelfand
Journal:  Sci Rep       Date:  2022-10-20       Impact factor: 4.996

3.  New group of transmembrane proteins associated with desiccation tolerance in the anhydrobiotic midge Polypedilum vanderplanki.

Authors:  Taisiya A Voronina; Alexander A Nesmelov; Sabina A Kondratyeva; Ruslan M Deviatiiarov; Yugo Miyata; Shoko Tokumoto; Richard Cornette; Oleg A Gusev; Takahiro Kikawada; Elena I Shagimardanova
Journal:  Sci Rep       Date:  2020-07-15       Impact factor: 4.379

4.  Combined metabolome and transcriptome analysis reveals key components of complete desiccation tolerance in an anhydrobiotic insect.

Authors:  Alina Ryabova; Richard Cornette; Alexander Cherkasov; Masahiko Watanabe; Takashi Okuda; Elena Shagimardanova; Takahiro Kikawada; Oleg Gusev
Journal:  Proc Natl Acad Sci U S A       Date:  2020-07-28       Impact factor: 11.205

5.  Diversity and Regulation of S-Adenosylmethionine Dependent Methyltransferases in the Anhydrobiotic Midge.

Authors:  Ruslan Deviatiiarov; Rustam Ayupov; Alexander Laikov; Elena Shagimardanova; Takahiro Kikawada; Oleg Gusev
Journal:  Insects       Date:  2020-09-16       Impact factor: 2.769

6.  Slow release of oxygen from carbamide peroxide for promoting the proliferation of human brain microvascular endothelial cells under hypoxia.

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Journal:  Ann Transl Med       Date:  2021-01

7.  The Multiplanetary Future of Plant Synthetic Biology.

Authors:  Briardo Llorente; Thomas C Williams; Hugh D Goold
Journal:  Genes (Basel)       Date:  2018-07-10       Impact factor: 4.096

8.  Identification of a master transcription factor and a regulatory mechanism for desiccation tolerance in the anhydrobiotic cell line Pv11.

Authors:  Takahiro G Yamada; Yusuke Hiki; Noriko F Hiroi; Elena Shagimardanova; Oleg Gusev; Richard Cornette; Takahiro Kikawada; Akira Funahashi
Journal:  PLoS One       Date:  2020-03-19       Impact factor: 3.240

Review 9.  Mechanisms of Desiccation Tolerance: Themes and Variations in Brine Shrimp, Roundworms, and Tardigrades.

Authors:  Jonathan D Hibshman; James S Clegg; Bob Goldstein
Journal:  Front Physiol       Date:  2020-10-23       Impact factor: 4.566

10.  Genome-Wide Role of HSF1 in Transcriptional Regulation of Desiccation Tolerance in the Anhydrobiotic Cell Line, Pv11.

Authors:  Shoko Tokumoto; Yugo Miyata; Ruslan Deviatiiarov; Takahiro G Yamada; Yusuke Hiki; Olga Kozlova; Yuki Yoshida; Richard Cornette; Akira Funahashi; Elena Shagimardanova; Oleg Gusev; Takahiro Kikawada
Journal:  Int J Mol Sci       Date:  2021-05-28       Impact factor: 5.923

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