Literature DB >> 29462489

DNA methylation dynamics of genomic imprinting in mouse development.

Jennifer M SanMiguel1, Marisa S Bartolomei1.   

Abstract

DNA methylation is an essential epigenetic mark crucial for normal mammalian development. This modification controls the expression of a unique class of genes, designated as imprinted, which are expressed monoallelically and in a parent-of-origin-specific manner. Proper parental allele-specific DNA methylation at imprinting control regions (ICRs) is necessary for appropriate imprinting. Processes that deregulate DNA methylation of imprinted loci cause disease in humans. DNA methylation patterns dramatically change during mammalian development: first, the majority of the genome, with the exception of ICRs, is demethylated after fertilization, and subsequently undergoes genome-wide de novo DNA methylation. Secondly, after primordial germ cells are specified in the embryo, another wave of demethylation occurs, with ICR demethylation occurring late in the process. Lastly, ICRs reacquire DNA methylation imprints in developing germ cells. We describe the past discoveries and current literature defining these crucial dynamics in relation to imprinted genes and the rest of the genome.

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Year:  2018        PMID: 29462489      PMCID: PMC6044325          DOI: 10.1093/biolre/ioy036

Source DB:  PubMed          Journal:  Biol Reprod        ISSN: 0006-3363            Impact factor:   4.285


  113 in total

1.  Embryonic lethal phenotype reveals a function of TDG in maintaining epigenetic stability.

Authors:  Daniel Cortázar; Christophe Kunz; Jim Selfridge; Teresa Lettieri; Yusuke Saito; Eilidh MacDougall; Annika Wirz; David Schuermann; Angelika L Jacobs; Fredy Siegrist; Roland Steinacher; Josef Jiricny; Adrian Bird; Primo Schär
Journal:  Nature       Date:  2011-01-30       Impact factor: 49.962

2.  Maintenance of self-renewal ability of mouse embryonic stem cells in the absence of DNA methyltransferases Dnmt1, Dnmt3a and Dnmt3b.

Authors:  Akiko Tsumura; Tomohiro Hayakawa; Yuichi Kumaki; Shin-ichiro Takebayashi; Morito Sakaue; Chisa Matsuoka; Kunitada Shimotohno; Fuyuki Ishikawa; En Li; Hiroki R Ueda; Jun-ichi Nakayama; Masaki Okano
Journal:  Genes Cells       Date:  2006-07       Impact factor: 1.891

3.  Embryonic germ cells induce epigenetic reprogramming of somatic nucleus in hybrid cells.

Authors:  M Tada; T Tada; L Lefebvre; S C Barton; M A Surani
Journal:  EMBO J       Date:  1997-11-03       Impact factor: 11.598

4.  Altering TET dioxygenase levels within physiological range affects DNA methylation dynamics of HEK293 cells.

Authors:  Christian Grosser; Nicholas Wagner; Katrin Grothaus; Bernhard Horsthemke
Journal:  Epigenetics       Date:  2015-07-17       Impact factor: 4.528

5.  Crystal structure of TET2-DNA complex: insight into TET-mediated 5mC oxidation.

Authors:  Lulu Hu; Ze Li; Jingdong Cheng; Qinhui Rao; Wei Gong; Mengjie Liu; Yujiang Geno Shi; Jiayu Zhu; Ping Wang; Yanhui Xu
Journal:  Cell       Date:  2013-12-05       Impact factor: 41.582

6.  Simultaneous deletion of the methylcytosine oxidases Tet1 and Tet3 increases transcriptome variability in early embryogenesis.

Authors:  Jinsuk Kang; Matthias Lienhard; William A Pastor; Ashu Chawla; Mark Novotny; Ageliki Tsagaratou; Roger S Lasken; Elizabeth C Thompson; M Azim Surani; Sergei B Koralov; Sundeep Kalantry; Lukas Chavez; Anjana Rao
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-21       Impact factor: 11.205

7.  The mouse insulin-like growth factor type-2 receptor is imprinted and closely linked to the Tme locus.

Authors:  D P Barlow; R Stöger; B G Herrmann; K Saito; N Schweifer
Journal:  Nature       Date:  1991-01-03       Impact factor: 49.962

8.  Erasure of methylation imprinting of Igf2r during mouse primordial germ-cell development.

Authors:  Shun Sato; Tomomi Yoshimizu; Eimei Sato; Yasuhisa Matsui
Journal:  Mol Reprod Dev       Date:  2003-05       Impact factor: 2.609

9.  Genome-wide reprogramming in the mouse germ line entails the base excision repair pathway.

Authors:  Petra Hajkova; Sean J Jeffries; Caroline Lee; Nigel Miller; Stephen P Jackson; M Azim Surani
Journal:  Science       Date:  2010-07-02       Impact factor: 47.728

10.  More than insulator: multiple roles of CTCF at the H19-Igf2 imprinted domain.

Authors:  Purnima Singh; Dong-Hoon Lee; Piroska E Szabó
Journal:  Front Genet       Date:  2012-10-15       Impact factor: 4.599

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  17 in total

1.  A bipartite element with allele-specific functions safeguards DNA methylation imprints at the Dlk1-Dio3 locus.

Authors:  Boaz E Aronson; Laurianne Scourzic; Veevek Shah; Emily Swanzey; Andreas Kloetgen; Alexander Polyzos; Abhishek Sinha; Annabel Azziz; Inbal Caspi; Jiexi Li; Bobbie Pelham-Webb; Rachel A Glenn; Thomas Vierbuchen; Hynek Wichterle; Aristotelis Tsirigos; Meelad M Dawlaty; Matthias Stadtfeld; Effie Apostolou
Journal:  Dev Cell       Date:  2021-10-27       Impact factor: 12.270

2.  Effects of oocyte vitrification on gene expression in the liver and kidney tissues of adult offspring.

Authors:  Lei Zhang; Huanhuan Chen; Chenchen Cui; Linlin Liang; Hengtao Ge; Li Meng; Cuilian Zhang
Journal:  J Assist Reprod Genet       Date:  2022-10-12       Impact factor: 3.357

3.  The growth and development conditions in mouse offspring derived from ovarian tissue cryopreservation and orthotopic transplantation.

Authors:  Zhe Yan; Qing Li; Long Zhang; Beijia Kang; Wei Fan; Tang Deng; Jiang Zhu; Yan Wang
Journal:  J Assist Reprod Genet       Date:  2020-03-27       Impact factor: 3.412

Review 4.  The regulation mechanisms and the Lamarckian inheritance property of DNA methylation in animals.

Authors:  Yulong Li; Yujing Xu; Tongxu Liu; Hengyi Chang; Xiaojun Yang
Journal:  Mamm Genome       Date:  2021-04-15       Impact factor: 2.957

5.  Melatonin prevents deterioration in quality by preserving epigenetic modifications of porcine oocytes after prolonged culture.

Authors:  Junyu Nie; Peng Xiao; Xuefang Wang; Xiaogan Yang; Huiyan Xu; Kehuan Lu; Shengsheng Lu; Xingwei Liang
Journal:  Aging (Albany NY)       Date:  2018-12-10       Impact factor: 5.682

6.  Loss of H3K27me3 imprinting in the Sfmbt2 miRNA cluster causes enlargement of cloned mouse placentas.

Authors:  Kimiko Inoue; Narumi Ogonuki; Satoshi Kamimura; Hiroki Inoue; Shogo Matoba; Michiko Hirose; Arata Honda; Kento Miura; Masashi Hada; Ayumi Hasegawa; Naomi Watanabe; Yukiko Dodo; Keiji Mochida; Atsuo Ogura
Journal:  Nat Commun       Date:  2020-05-01       Impact factor: 14.919

7.  DNA methylation biomarkers for nasopharyngeal carcinoma.

Authors:  Baoai Han; Xiuping Yang; Po Zhang; Ya Zhang; Yaqin Tu; Zuhong He; Yongqin Li; Jie Yuan; Yaodong Dong; Davood K Hosseini; Tao Zhou; Haiying Sun
Journal:  PLoS One       Date:  2020-04-09       Impact factor: 3.240

Review 8.  Stability and Lability of Parental Methylation Imprints in Development and Disease.

Authors:  Sabina Farhadova; Melisa Gomez-Velazquez; Robert Feil
Journal:  Genes (Basel)       Date:  2019-12-02       Impact factor: 4.096

Review 9.  Early life lessons: The lasting effects of germline epigenetic information on organismal development.

Authors:  Carolina Galan; Marina Krykbaeva; Oliver J Rando
Journal:  Mol Metab       Date:  2019-12-27       Impact factor: 7.422

10.  Identification of candidate aberrantly methylated and differentially expressed genes in Esophageal squamous cell carcinoma.

Authors:  Bao-Ai Han; Xiu-Ping Yang; Davood K Hosseini; Po Zhang; Ya Zhang; Jin-Tao Yu; Shan Chen; Fan Zhang; Tao Zhou; Hai-Ying Sun
Journal:  Sci Rep       Date:  2020-06-16       Impact factor: 4.379

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