Literature DB >> 29453028

Transposons: a blessing curse.

Manu J Dubin1, Ortrun Mittelsten Scheid2, Claude Becker3.   

Abstract

The genomes of most plant species are dominated by transposable elements (TEs). Once considered as 'junk DNA', TEs are now known to have a major role in driving genome evolution. Over the last decade, it has become apparent that some stress conditions and other environmental stimuli can drive bursts of activity of certain TE families and consequently new TE insertions. These can give rise to altered gene expression patterns and phenotypes, with new TE insertions sometimes causing flanking genes to become transcriptionally responsive to the same stress conditions that activated the TE in the first place. Such connections between TE-mediated increases in diversity and an accelerated rate of genome evolution provide powerful mechanisms for plants to adapt more rapidly to new environmental conditions. This review will focus on environmentally induced transposition, the mechanisms by which it alters gene expression, and the consequences for plant genome evolution and breeding.
Copyright © 2018 The Authors. Published by Elsevier Ltd.. All rights reserved.

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Year:  2018        PMID: 29453028     DOI: 10.1016/j.pbi.2018.01.003

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN: 1369-5266            Impact factor:   7.834


  41 in total

1.  Plant Genome Editing and the Relevance of Off-Target Changes.

Authors:  Nathaniel Graham; Gunvant B Patil; David M Bubeck; Raymond C Dobert; Kevin C Glenn; Annie T Gutsche; Sandeep Kumar; John A Lindbo; Luis Maas; Gregory D May; Miguel E Vega-Sanchez; Robert M Stupar; Peter L Morrell
Journal:  Plant Physiol       Date:  2020-05-26       Impact factor: 8.340

Review 2.  Omics-Facilitated Crop Improvement for Climate Resilience and Superior Nutritive Value.

Authors:  Tinashe Zenda; Songtao Liu; Anyi Dong; Jiao Li; Yafei Wang; Xinyue Liu; Nan Wang; Huijun Duan
Journal:  Front Plant Sci       Date:  2021-12-01       Impact factor: 5.753

Review 3.  The Role of Transposable Elements of the Human Genome in Neuronal Function and Pathology.

Authors:  Ekaterina Chesnokova; Alexander Beletskiy; Peter Kolosov
Journal:  Int J Mol Sci       Date:  2022-05-23       Impact factor: 6.208

Review 4.  DNA methylation analysis in plants: review of computational tools and future perspectives.

Authors:  Jimmy Omony; Thomas Nussbaumer; Ruben Gutzat
Journal:  Brief Bioinform       Date:  2020-05-21       Impact factor: 11.622

Review 5.  Specificities and Dynamics of Transposable Elements in Land Plants.

Authors:  Corinne Mhiri; Filipe Borges; Marie-Angèle Grandbastien
Journal:  Biology (Basel)       Date:  2022-03-23

6.  The Singular Evolution of Olea Genome Structure.

Authors:  Flavia Mascagni; Elena Barghini; Marilena Ceccarelli; Luciana Baldoni; Carlos Trapero; Concepción Muñoz Díez; Lucia Natali; Andrea Cavallini; Tommaso Giordani
Journal:  Front Plant Sci       Date:  2022-03-31       Impact factor: 5.753

7.  Genetic effect of a new allele for the flowering time locus Ghd7 in rice.

Authors:  Kenji Fujino; Utako Yamanouchi
Journal:  Breed Sci       Date:  2020-06-05       Impact factor: 2.086

8.  Specific LTR-Retrotransposons Show Copy Number Variations between Wild and Cultivated Sunflowers.

Authors:  Flavia Mascagni; Alberto Vangelisti; Tommaso Giordani; Andrea Cavallini; Lucia Natali
Journal:  Genes (Basel)       Date:  2018-08-29       Impact factor: 4.096

Review 9.  Advances in Cereal Crop Genomics for Resilience under Climate Change.

Authors:  Tinashe Zenda; Songtao Liu; Anyi Dong; Huijun Duan
Journal:  Life (Basel)       Date:  2021-05-29

10.  MITE Tracker: an accurate approach to identify miniature inverted-repeat transposable elements in large genomes.

Authors:  Juan Manuel Crescente; Diego Zavallo; Marcelo Helguera; Leonardo Sebastián Vanzetti
Journal:  BMC Bioinformatics       Date:  2018-10-03       Impact factor: 3.169

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