| Literature DB >> 29449875 |
Shan Lu1, Fan Lu1, Wenqiang You1, Zheyi Wang1, Yu Liu1, Kenji Omasa2.
Abstract
BACKGROUND: Leaf chlorophyll content (LCC) provides valuable information about plant physiology. Most of the published chlorophyll vegetation indices at the leaf level have been based on the spectral characteristics of the adaxial leaf surface, thus, they are not appropriate for estimating LCC when both the adaxial and abaxial leaf surfaces influence the spectral reflectance. We attempted to address this challenge by measuring the spectral reflectance of the adaxial and abaxial leaf surfaces of several plant species at different growth stages using a portable field spectroradiometer. The relationships between more than 30 published reflectance indices with LCC were analyzed to determine which index estimated LCC most effectively. Additionally, since the relationships determined on one set of samples might have poor predictive performances when applied to other samples, a robust wavelength region is required to render the spectral index generally applicable, regardless of the leaf surface or plant species.Entities:
Keywords: Abaxial; Adaxial; Leaf chlorophyll content; Reflectance; Robust wavelength region
Year: 2018 PMID: 29449875 PMCID: PMC5812224 DOI: 10.1186/s13007-018-0281-z
Source DB: PubMed Journal: Plant Methods ISSN: 1746-4811 Impact factor: 4.993
The existing vegetation indices used in this study
| Vegetation index | Formula | Reference |
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| 1/ | 1/ | [ |
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| SD | This paper | |
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| PSSR | [ | |
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| SR | This paper | |
| NDI | ( | [ |
| PSND | ( | [ |
| ( | ( | [ |
| ( | ( | [ |
| ND | | | This paper |
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| VOG2 | ( | [ |
| CARI | (|(a*670 + | [ |
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| MCARI | [( | [ |
| TCARI/OSAVI | 3*[( | [ |
| TCARI | 3*[( | [ |
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| ( | ( | [ |
| ( | ( | [ |
| MDATT index: ( | MDATT index: ( | This paper |
Fig. 1The reflectance of the adaxial and abaxial leaf surfaces for each plant species
Fig. 2The spectral differences between the adaxial and abaxial leaf surfaces for each plant species
Fig. 3The mean spectral reflectance on the adaxial and abaxial surface (a) and reflectance differences between the two leaf surfaces (b)
Fig. 4The relationship between the best performing MDATT and LCC for each plant species on the adaxial surface
Fig. 5The relationship between the best performing MDATT and LCC for each plant species on the abaxial surface
Fig. 6The relationship between the best performing MDATT and LCC for each plant species when the adaxial and abaxial surfaces data are combined
The coefficients of determination and RMSE of the vegetation indices for estimating the LCC on adaxial, abaxial, and both surfaces (only the top 15 vegetation indices with high R2 value were listed)
| All plants | ||||||||
|---|---|---|---|---|---|---|---|---|
| Adaxial and abaxial | Adaxial | Abaxial | ||||||
| VI | R2 | RMSE (μg/cm2) | VI | R2 | RMSE (μg/cm2) | VI | R2 | RMSE (μg/cm2) |
| MDATT: (R721 − R744)/(R721 − R714) | 0.856 | 6.872 | MDATT: (R691 − R745)/(R691 − R736) | 0.910 | 5.426 | MDATT: (R688 − R745)/(R688 − R736) | 0.912 | 5.370 |
| (R719 − R726)/(R719 − R743) | 0.801 | 8.040 | SR:R859/R721 | 0.907 | 5.514 | D754/D704 | 0.854 | 6.904 |
| D754/D704 | 0.699 | 9.907 | ND: (R742 − R741)/(R742 + R741) | 0.906 | 5.545 | (R850 − R710)/(R850 − R680) | 0.790 | 8.289 |
| (R850 − R710)/(R850 − R680) | 0.690 | 10.055 | VOG2:(R734 − R747)/(R715 + R726) | 0.905 | 5.559 | (R719 − R726)/(R719 − R743) | 0.788 | 8.310 |
| SR: R742/R760 | 0.615 | 11.199 | R750/R710 | 0.894 | 5.878 | SD: R741 − R748 | 0.787 | 8.559 |
| ND: (R745 − R751)/(R745 + R751) | 0.614 | 11.205 | SD: R745 − R744 | 0.889 | 6.026 | D740 | 0.771 | 10.105 |
| SD: R704 − R680 | 0.615 | 11.254 | D740 | 0.880 | 6.270 | SR: R740/R759 | 0.690 | 10.106 |
| D740 | 0.580 | 11.698 | RII | 0.873 | 6.435 | ND: (R740 − R760)/(R740 + R760) | 0.690 | 10.267 |
| VOG2 | 0.548 | 12.127 | R750/R700 | 0.858 | 6.799 | D730 | 0.677 | 10.845 |
| TCARI | 0.537 | 12.279 | D754/D704 | 0.848 | 7.053 | VOG2 | 0.640 | 11.807 |
| D730 | 0.520 | 12.507 | (R719 − R726)/(R719 − R743) | 0.845 | 7.110 | TCARI | 0.521 | 12.505 |
| MCARI | 0.445 | 13.444 | D730 | 0.830 | 7.456 | TCARI/OSAVI | 0.487 | 12.945 |
| R750/R710 | 0.437 | 13.536 | 1/R700 − 1/R750 | 0.820 | 7.674 | R750/R710 | 0.447 | 13.442 |
| TCARI/OSAVI | 0.432 | 13.605 | (R850 − R710)/(R850 − R680) | 0.801 | 8.066 | RII | 0.413 | 13.842 |
| R672/(R550*R708) | 0.420 | 13.748 | NDI | 0.800 | 8.081 | MCARI | 0.392 | 14.084 |
Fig. 7The relationship between the best performing MDATT and LCC for all the plant species on both adaxial and abaxial surfaces
Fig. 8Intersected R2 contour map of the adaxial, abaxial, and both leaf surfaces for each plant species (the dots represent the wavelength combination with the highest R2 for the adaxial surface of each plant dataset, the squares represent the wavelength combination with the highest R2 for the adaxial surface of each plant dataset, and the triangles represent the wavelength combination with the highest R2 combination for both surfaces of each plant dataset)
Fig. 9Contour maps for R2 between LCC and the MDATT index with the λ1 and λ3 (a), and λ2 and λ3 (b) combinations derived from the adaxial and abaxial leaf reflectance for all the plants