Literature DB >> 29444398

The Importance of Cell Shape Sampling To Accurately Predict Flexibility in Metal-Organic Frameworks.

Sven M J Rogge1, Senne Caroes1, Ruben Demuynck1, Michel Waroquier1, Veronique Van Speybroeck1, An Ghysels1.   

Abstract

In this work, the influence of cell shape sampling on the predicted stability of the different metastable phases in flexible metal-organic frameworks at finite temperatures is investigated. The influence on the free energy by neglecting cell shape sampling is quantified for the prototypical MIL-53(Al) and the topical DUT-49(Cu). This goal is achieved by constructing free energy profiles in ensembles either in which the phase space associated with the cell shape is sampled explicitly or in which the cell shape is kept fixed. When neglecting cell shape sampling, thermodynamic integration of the hydrostatic pressure yields unreliable free energy profiles that depend on the choice of the fixed cell shape. In this work, we extend the thermodynamic integration procedure via the introduction of a generalized pressure, derived from the Lagrangian strain tensor and the second Piola-Kirchhoff tensor. Using this generalized procedure, the dependence on the unit cell shape can be eliminated, and the inaccuracy in free energy stemming from the lack of cell shape sampling can be uniquely quantified. Finally, it is shown that the inaccuracy in free energy when fixing the cell shape at room temperature stems mainly from entropic contributions for both MIL-53(Al) and DUT-49(Cu).

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Year:  2018        PMID: 29444398     DOI: 10.1021/acs.jctc.7b01134

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  3 in total

1.  Low Temperature Calorimetry Coupled with Molecular Simulations for an In-Depth Characterization of the Guest-Dependent Compliant Behavior of MOFs.

Authors:  Paul Iacomi; Bin Zheng; Simon Krause; Stefan Kaskel; Guillaume Maurin; Philip L Llewellyn
Journal:  Chem Mater       Date:  2020-03-30       Impact factor: 10.508

2.  Charting the Complete Thermodynamic Landscape of Gas Adsorption for a Responsive Metal-Organic Framework.

Authors:  Ruben Goeminne; Simon Krause; Stefan Kaskel; Toon Verstraelen; Jack D Evans
Journal:  J Am Chem Soc       Date:  2021-03-15       Impact factor: 16.383

3.  Protocol for Identifying Accurate Collective Variables in Enhanced Molecular Dynamics Simulations for the Description of Structural Transformations in Flexible Metal-Organic Frameworks.

Authors:  Ruben Demuynck; Jelle Wieme; Sven M J Rogge; Karen D Dedecker; Louis Vanduyfhuys; Michel Waroquier; Veronique Van Speybroeck
Journal:  J Chem Theory Comput       Date:  2018-11-05       Impact factor: 6.006

  3 in total

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