Literature DB >> 29439213

A Genetic Network for Systemic RNA Silencing in Plants.

Weiwei Chen1, Xian Zhang1, Yaya Fan1, Bin Li1, Eugene Ryabov1,2, Nongnong Shi1, Mei Zhao1, Zhiming Yu1, Cheng Qin1, Qianqian Zheng1, Pengcheng Zhang1, Huizhong Wang1, Stephen Jackson2, Qi Cheng3, Yule Liu4, Philippe Gallusci5, Yiguo Hong6,2,7.   

Abstract

Non-cell autonomous RNA silencing can spread from cell to cell and over long distances in animals and plants. However, the genetic requirements and signals involved in plant mobile gene silencing are poorly understood. Here, we identified a DICER-LIKE2 (DCL2)-dependent mechanism for systemic spread of posttranscriptional RNA silencing, also known as posttranscriptional gene silencing (PTGS), in Nicotiana benthamiana Using a suite of transgenic DCL RNAi lines coupled with a GFP reporter, we demonstrated that N. benthamiana DCL1, DCL2, DCL3, and DCL4 are required to produce microRNAs and 22, 24, and 21nt small interfering RNAs (siRNAs), respectively. All investigated siRNAs produced in local incipient cells were present at low levels in distal tissues. Inhibition of DCL2 expression reduced the spread of gene silencing, while suppression of DCL3 or DCL4 expression enhanced systemic PTGS. In contrast to DCL4 RNAi lines, DCL2-DCL4 double-RNAi lines developed systemic PTGS similar to that observed in DCL2 RNAi. We further showed that the 21 or 24 nt local siRNAs produced by DCL4 or DCL3 were not involved in long-distance gene silencing. Grafting experiments demonstrated that DCL2 was required in the scion to respond to the signal, but not in the rootstock to produce/send the signal. These results suggest a coordinated DCL genetic pathway in which DCL2 plays an essential role in systemic PTGS in N. benthamiana, while both DCL4 and DCL3 attenuate systemic PTGS. We discuss the potential role of 21, 22, and 24 nt siRNAs in systemic PTGS.
© 2018 American Society of Plant Biologists. All Rights Reserved.

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Year:  2018        PMID: 29439213      PMCID: PMC5884585          DOI: 10.1104/pp.17.01828

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


  54 in total

1.  22-Nucleotide RNAs trigger secondary siRNA biogenesis in plants.

Authors:  Ho-Ming Chen; Li-Teh Chen; Kanu Patel; Yi-Hang Li; David C Baulcombe; Shu-Hsing Wu
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-19       Impact factor: 11.205

2.  An RNA-dependent RNA polymerase prevents meristem invasion by potato virus X and is required for the activity but not the production of a systemic silencing signal.

Authors:  Frank Schwach; Fabian E Vaistij; Louise Jones; David C Baulcombe
Journal:  Plant Physiol       Date:  2005-07-22       Impact factor: 8.340

Review 3.  Intercellular and systemic movement of RNA silencing signals.

Authors:  Charles W Melnyk; Attila Molnar; David C Baulcombe
Journal:  EMBO J       Date:  2011-08-31       Impact factor: 11.598

4.  Fast gapped-read alignment with Bowtie 2.

Authors:  Ben Langmead; Steven L Salzberg
Journal:  Nat Methods       Date:  2012-03-04       Impact factor: 28.547

5.  A Genetic Screen for Impaired Systemic RNAi Highlights the Crucial Role of DICER-LIKE 2.

Authors:  Christelle Taochy; Nial R Gursanscky; Jiangling Cao; Stephen J Fletcher; Uwe Dressel; Neena Mitter; Matthew R Tucker; Anna M G Koltunow; John L Bowman; Hervé Vaucheret; Bernard J Carroll
Journal:  Plant Physiol       Date:  2017-09-19       Impact factor: 8.340

6.  Removal of a cryptic intron and subcellular localization of green fluorescent protein are required to mark transgenic Arabidopsis plants brightly.

Authors:  J Haseloff; K R Siemering; D C Prasher; S Hodge
Journal:  Proc Natl Acad Sci U S A       Date:  1997-03-18       Impact factor: 11.205

7.  Transport of dsRNA into cells by the transmembrane protein SID-1.

Authors:  Evan H Feinberg; Craig P Hunter
Journal:  Science       Date:  2003-09-12       Impact factor: 47.728

8.  Mobile small RNAs regulate genome-wide DNA methylation.

Authors:  Mathew G Lewsey; Thomas J Hardcastle; Charles W Melnyk; Attila Molnar; Adrián Valli; Mark A Urich; Joseph R Nery; David C Baulcombe; Joseph R Ecker
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-19       Impact factor: 11.205

Review 9.  Small RNAs break out: the molecular cell biology of mobile small RNAs.

Authors:  Peter Sarkies; Eric A Miska
Journal:  Nat Rev Mol Cell Biol       Date:  2014-08       Impact factor: 94.444

10.  A virulent strain of deformed wing virus (DWV) of honeybees (Apis mellifera) prevails after Varroa destructor-mediated, or in vitro, transmission.

Authors:  Eugene V Ryabov; Graham R Wood; Jessica M Fannon; Jonathan D Moore; James C Bull; Dave Chandler; Andrew Mead; Nigel Burroughs; David J Evans
Journal:  PLoS Pathog       Date:  2014-06-26       Impact factor: 6.823

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  13 in total

1.  Profile of siRNAs derived from green fluorescent protein (GFP)-tagged Papaya leaf distortion mosaic virus in infected papaya plants.

Authors:  Guangyuan Zhao; Decai Tuo; Pu Yan; Xiaoying Li; Peng Zhou; Wentao Shen
Journal:  Virus Genes       Date:  2018-09-14       Impact factor: 2.332

2.  METHYLTRANSFERASE1 and Ripening Modulate Vivipary during Tomato Fruit Development.

Authors:  Mengqin Yao; Weiwei Chen; Junhua Kong; Xinlian Zhang; Nongnong Shi; Silin Zhong; Ping Ma; Philippe Gallusci; Stephen Jackson; Yule Liu; Yiguo Hong
Journal:  Plant Physiol       Date:  2020-06-05       Impact factor: 8.340

Review 3.  RNAi as a Foliar Spray: Efficiency and Challenges to Field Applications.

Authors:  Bao Tram L Hoang; Stephen J Fletcher; Christopher A Brosnan; Amol B Ghodke; Narelle Manzie; Neena Mitter
Journal:  Int J Mol Sci       Date:  2022-06-14       Impact factor: 6.208

4.  Hotspot siRNA Confers Plant Resistance against Viral Infection.

Authors:  Atef Mohamed; Zhenhui Jin; Toba Osman; Nongnong Shi; Mahmut Tör; Stephen Jackson; Yiguo Hong
Journal:  Biology (Basel)       Date:  2022-05-06

Review 5.  Plant and animal small RNA communications between cells and organisms.

Authors:  Xuemei Chen; Oded Rechavi
Journal:  Nat Rev Mol Cell Biol       Date:  2021-10-27       Impact factor: 113.915

6.  Topically delivered 22 nt siRNAs enhance RNAi silencing of endogenous genes in two species.

Authors:  Bill Hendrix; Wei Zheng; Matthew J Bauer; Ericka R Havecker; Jennifer T Mai; Paul H Hoffer; Rick A Sanders; Brian D Eads; Amy Caruano-Yzermans; Danielle N Taylor; Chelly Hresko; Janette Oakes; Alberto B Iandolino; Michael J Bennett; Jill Deikman
Journal:  Planta       Date:  2021-08-26       Impact factor: 4.116

7.  Dual resistance of transgenic plants against Cymbidium mosaic virus and Odontoglossum ringspot virus.

Authors:  Ting-Yu Chen; Hsuan Pai; Liang-Yu Hou; Shu-Chuan Lee; Tzu-Tung Lin; Chih-Hao Chang; Fu-Chen Hsu; Yau-Heiu Hsu; Na-Sheng Lin
Journal:  Sci Rep       Date:  2019-07-15       Impact factor: 4.379

8.  Molecular and functional characterization of the SBP-box transcription factor SPL-CNR in tomato fruit ripening and cell death.

Authors:  Tongfei Lai; Xiaohong Wang; Bishun Ye; Mingfei Jin; Weiwei Chen; Ying Wang; Yingying Zhou; Andrew M Blanks; Mei Gu; Pengcheng Zhang; Xinlian Zhang; Chunyang Li; Huizhong Wang; Yule Liu; Philippe Gallusci; Mahmut Tör; Yiguo Hong
Journal:  J Exp Bot       Date:  2020-05-30       Impact factor: 6.992

9.  Small RNA inhibits infection by downy mildew pathogen Hyaloperonospora arabidopsidis.

Authors:  Özlem Bilir; Osman Telli; Chris Norman; Hikmet Budak; Yiguo Hong; Mahmut Tör
Journal:  Mol Plant Pathol       Date:  2019-09-26       Impact factor: 5.663

10.  Tomato DCL2b is required for the biosynthesis of 22-nt small RNAs, the resulting secondary siRNAs, and the host defense against ToMV.

Authors:  Tian Wang; Zhiqi Deng; Xi Zhang; Hongzheng Wang; Yu Wang; Xiuying Liu; Songyu Liu; Feng Xu; Tao Li; Daqi Fu; Benzhong Zhu; Yunbo Luo; Hongliang Zhu
Journal:  Hortic Res       Date:  2018-09-01       Impact factor: 6.793

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