Literature DB >> 29432021

Computation of a Theoretical Membrane Phase Diagram and the Role of Phase in Lipid-Raft-Mediated Protein Organization.

Eshan D Mitra1, Samuel C Whitehead2, David Holowka1, Barbara Baird1, James P Sethna2.   

Abstract

Lipid phase heterogeneity in the plasma membrane is thought to be crucial for many aspects of cell signaling, but the physical basis of participating membrane domains such as "lipid rafts" remains controversial. Here we consider a lattice model yielding a phase diagram that includes several states proposed to be relevant for the cell membrane, including microemulsion-which can be related to membrane curvature-and Ising critical behavior. Using a neural-network-based machine learning approach, we compute the full phase diagram of this lattice model. We analyze selected regions of this phase diagram in the context of a signaling initiation event in mast cells: recruitment of the membrane-anchored tyrosine kinase Lyn to a cluster of transmembrane IgE-FcεRI receptors. We find that model membrane systems in microemulsion and Ising critical states can mediate roughly equal levels of kinase recruitment (binding energy ∼ -0.6 kB T), whereas a membrane near a tricritical point can mediate a much stronger kinase recruitment (-1.7 kB T). By comparing several models for lipid heterogeneity within a single theoretical framework, this work points to testable differences between existing models. We also suggest the tricritical point as a new possibility for the basis of membrane domains that facilitate preferential partitioning of signaling components.

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Year:  2018        PMID: 29432021      PMCID: PMC6219384          DOI: 10.1021/acs.jpcb.7b10695

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  45 in total

1.  Comparison of three ternary lipid bilayer mixtures: FRET and ESR reveal nanodomains.

Authors:  Frederick A Heberle; Jing Wu; Shih Lin Goh; Robin S Petruzielo; Gerald W Feigenson
Journal:  Biophys J       Date:  2010-11-17       Impact factor: 4.033

2.  First-order phase transition and tricritical scaling behavior of the Blume-Capel model: A Wang-Landau sampling approach.

Authors:  Wooseop Kwak; Joohyeok Jeong; Juhee Lee; Dong-Hee Kim
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2015-08-24

3.  Finite-size scaling study of the two-dimensional Blume-Capel model.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1986-02-01

4.  Lattice model of microemulsions: The effect of fluctuations in one and two dimensions.

Authors: 
Journal:  Phys Rev A       Date:  1990-08-15       Impact factor: 3.140

5.  Minimal model of plasma membrane heterogeneity requires coupling cortical actin to criticality.

Authors:  Benjamin B Machta; Stefanos Papanikolaou; James P Sethna; Sarah L Veatch
Journal:  Biophys J       Date:  2011-04-06       Impact factor: 4.033

Review 6.  The tyrosine kinase network regulating mast cell activation.

Authors:  Alasdair M Gilfillan; Juan Rivera
Journal:  Immunol Rev       Date:  2009-03       Impact factor: 12.988

Review 7.  An introduction to critical points for biophysicists; observations of compositional heterogeneity in lipid membranes.

Authors:  Aurelia R Honerkamp-Smith; Sarah L Veatch; Sarah L Keller
Journal:  Biochim Biophys Acta       Date:  2008-10-01

Review 8.  Oligomerization and nanocluster organization render specificity.

Authors:  Ruth Nussinov; Hyunbum Jang; Chung-Jung Tsai
Journal:  Biol Rev Camb Philos Soc       Date:  2014-06-11

9.  Separation of liquid phases in giant vesicles of ternary mixtures of phospholipids and cholesterol.

Authors:  Sarah L Veatch; Sarah L Keller
Journal:  Biophys J       Date:  2003-11       Impact factor: 4.033

10.  Raft formation in lipid bilayers coupled to curvature.

Authors:  Sina Sadeghi; Marcus Müller; Richard L C Vink
Journal:  Biophys J       Date:  2014-10-07       Impact factor: 4.033

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  5 in total

1.  Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance.

Authors:  Giray Enkavi; Matti Javanainen; Waldemar Kulig; Tomasz Róg; Ilpo Vattulainen
Journal:  Chem Rev       Date:  2019-03-12       Impact factor: 60.622

2.  Lattice Models for Protein Organization throughout Thylakoid Membrane Stacks.

Authors:  Andreana M Rosnik; Phillip L Geissler
Journal:  Biophys J       Date:  2020-05-01       Impact factor: 4.033

3.  Lipid-based and protein-based interactions synergize transmembrane signaling stimulated by antigen clustering of IgE receptors.

Authors:  Nirmalya Bag; Alice Wagenknecht-Wiesner; Allan Lee; Sophia M Shi; David A Holowka; Barbara A Baird
Journal:  Proc Natl Acad Sci U S A       Date:  2021-08-31       Impact factor: 11.205

Review 4.  Critical Phenomena in Plasma Membrane Organization and Function.

Authors:  Thomas R Shaw; Subhadip Ghosh; Sarah L Veatch
Journal:  Annu Rev Phys Chem       Date:  2020-12-01       Impact factor: 12.703

5.  Intelligent fluorescence image analysis of giant unilamellar vesicles using convolutional neural network.

Authors:  Il-Hyung Lee; Sam Passaro; Selin Ozturk; Juan Ureña; Weitian Wang
Journal:  BMC Bioinformatics       Date:  2022-01-21       Impact factor: 3.169

  5 in total

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