Literature DB >> 24917483

Oligomerization and nanocluster organization render specificity.

Ruth Nussinov1, Hyunbum Jang, Chung-Jung Tsai.   

Abstract

Nanoclusters are anchored to membranes, either within them or in the cytoplasm latched onto the cytoskeleton, whose reorganization can regulate their activity. Nanoclusters have been viewed in terms of cooperativity and activation; here we perceive nanocluster organization from a conformational standpoint. This leads us to suggest that while single molecules encode activity, nanoclusters induce specificity, and that this is their main evolutionary aim. Distinct, isoform-specific nanocluster organization can drive the preferred effector (and ligand) interactions and thereby designate signalling pathways. The absence of detailed structural information across the nanocluster, due to size and dynamics, hinders an in-depth grasp of its mechanistic features; however, available data already capture some of the principles and their functional 'raison d'être'. Collectively, clustering lends stability and reduces the likelihood of proteolytic cleavage; it also increases the effective local concentration and enables efficient cooperative activation. However, clustering does not determine the ability of the single molecule to function. Drugs targeting nanoclusters can attenuate activity by hampering cooperativity; however, this may not perturb activation and signalling, which originate from the molecules themselves, and as such, are likely to endure. What then is the major role of nanoclustering? Assuming that single molecules evolved first, with a subsequent increase in cellular complexity and emergence of highly similar isoform variants, evolution faced the threat of signalling promiscuity. We reason that this potential risk was thwarted by oligomerization and clustering; clustering confers higher specificity, and a concomitant extra layer of cellular control. In our Ras example, signalling will be more accurate as a dimer than as a monomer, where its isomer specificity could be compromised.
© 2014 The Authors. Biological Reviews © 2014 Cambridge Philosophical Society.

Entities:  

Keywords:  Ras; allosteric; allostery; co-localization; conformational states; cytoskeleton; microclusters; nanoclusters; oligomerization; scaffolding; signalling; structure

Mesh:

Substances:

Year:  2014        PMID: 24917483      PMCID: PMC4263682          DOI: 10.1111/brv.12124

Source DB:  PubMed          Journal:  Biol Rev Camb Philos Soc        ISSN: 0006-3231


  86 in total

1.  Crystal structure of an Eph receptor-ephrin complex.

Authors:  J P Himanen; K R Rajashankar; M Lackmann; C A Cowan; M Henkemeyer; D B Nikolov
Journal:  Nature       Date:  2001 Dec 20-27       Impact factor: 49.962

2.  Galectin multimerization and lattice formation are regulated by linker region structure.

Authors:  Lesley A Earl; Shuguang Bi; Linda G Baum
Journal:  Glycobiology       Date:  2010-09-23       Impact factor: 4.313

3.  IQGAP1 stimulates actin assembly through the N-WASP-Arp2/3 pathway.

Authors:  Christophe Le Clainche; Dominik Schlaepfer; Aldo Ferrari; Mirko Klingauf; Katarina Grohmanova; Alexey Veligodskiy; Dominique Didry; Diep Le; Coumaran Egile; Marie-France Carlier; Ruth Kroschewski
Journal:  J Biol Chem       Date:  2006-11-02       Impact factor: 5.157

4.  The energy landscapes and motions of proteins.

Authors:  H Frauenfelder; S G Sligar; P G Wolynes
Journal:  Science       Date:  1991-12-13       Impact factor: 47.728

Review 5.  A broad view of scaffolding suggests that scaffolding proteins can actively control regulation and signaling of multienzyme complexes through allostery.

Authors:  Ruth Nussinov; Buyong Ma; Chung-Jung Tsai
Journal:  Biochim Biophys Acta       Date:  2013-01-03

6.  The role of G-domain orientation and nucleotide state on the Ras isoform-specific membrane interaction.

Authors:  Shobhna Kapoor; Katrin Weise; Mirko Erlkamp; Gemma Triola; Herbert Waldmann; Roland Winter
Journal:  Eur Biophys J       Date:  2012-08-01       Impact factor: 1.733

Review 7.  Free energy diagrams for protein function.

Authors:  Ruth Nussinov; Chung-Jung Tsai
Journal:  Chem Biol       Date:  2014-02-06

8.  A conserved role of IQGAP1 in regulating TOR complex 1.

Authors:  Yemsrach K Tekletsadik; Robert Sonn; Mahasin A Osman
Journal:  J Cell Sci       Date:  2012-02-10       Impact factor: 5.285

9.  Spatial coupling of JNK activation to the B cell antigen receptor by tyrosine-phosphorylated ezrin.

Authors:  Neetha Parameswaran; Gospel Enyindah-Asonye; Nayer Bagheri; Neilay B Shah; Neetu Gupta
Journal:  J Immunol       Date:  2013-01-21       Impact factor: 5.422

10.  Structural plasticity of eph receptor A4 facilitates cross-class ephrin signaling.

Authors:  Thomas A Bowden; A Radu Aricescu; Joanne E Nettleship; Christian Siebold; Nahid Rahman-Huq; Raymond J Owens; David I Stuart; E Yvonne Jones
Journal:  Structure       Date:  2009-10-14       Impact factor: 5.006

View more
  20 in total

Review 1.  Drugging Ras GTPase: a comprehensive mechanistic and signaling structural view.

Authors:  Shaoyong Lu; Hyunbum Jang; Shuo Gu; Jian Zhang; Ruth Nussinov
Journal:  Chem Soc Rev       Date:  2016-07-11       Impact factor: 54.564

Review 2.  Omega-3 fatty acids, membrane remodeling and cancer prevention.

Authors:  Natividad R Fuentes; Eunjoo Kim; Yang-Yi Fan; Robert S Chapkin
Journal:  Mol Aspects Med       Date:  2018-04-12

Review 3.  Emerging role of chemoprotective agents in the dynamic shaping of plasma membrane organization.

Authors:  Natividad R Fuentes; Michael L Salinas; Eunjoo Kim; Robert S Chapkin
Journal:  Biochim Biophys Acta Biomembr       Date:  2017-03-22       Impact factor: 3.747

4.  Computation of a Theoretical Membrane Phase Diagram and the Role of Phase in Lipid-Raft-Mediated Protein Organization.

Authors:  Eshan D Mitra; Samuel C Whitehead; David Holowka; Barbara Baird; James P Sethna
Journal:  J Phys Chem B       Date:  2018-02-21       Impact factor: 2.991

5.  AdipoRon Attenuates Wnt Signaling by Reducing Cholesterol-Dependent Plasma Membrane Rigidity.

Authors:  Michael L Salinas; Natividad R Fuentes; Rachel Choate; Rachel C Wright; David N McMurray; Robert S Chapkin
Journal:  Biophys J       Date:  2019-09-16       Impact factor: 4.033

Review 6.  Intrinsic protein disorder in oncogenic KRAS signaling.

Authors:  Ruth Nussinov; Hyunbum Jang; Chung-Jung Tsai; Tsung-Jen Liao; Shuai Li; David Fushman; Jian Zhang
Journal:  Cell Mol Life Sci       Date:  2017-06-08       Impact factor: 9.261

7.  PDEδ Binding to Ras Isoforms Provides a Route to Proper Membrane Localization.

Authors:  Serena Muratcioglu; Hyunbum Jang; Attila Gursoy; Ozlem Keskin; Ruth Nussinov
Journal:  J Phys Chem B       Date:  2017-06-07       Impact factor: 2.991

Review 8.  Dynamic pattern generation in cell membranes: Current insights into membrane organization.

Authors:  Krishnan Raghunathan; Anne K Kenworthy
Journal:  Biochim Biophys Acta Biomembr       Date:  2018-05-09       Impact factor: 3.747

Review 9.  The Mystery of Rap1 Suppression of Oncogenic Ras.

Authors:  Ruth Nussinov; Hyunbum Jang; Mingzhen Zhang; Chung-Jung Tsai; Anna A Sablina
Journal:  Trends Cancer       Date:  2020-03-02

10.  Remodelling of primary human CD4+ T cell plasma membrane order by n-3 PUFA.

Authors:  Yang-Yi Fan; Natividad R Fuentes; Tim Y Hou; Rola Barhoumi; Xian C Li; Nicolaas E P Deutz; Marielle P K J Engelen; David N McMurray; Robert S Chapkin
Journal:  Br J Nutr       Date:  2017-12-18       Impact factor: 3.718

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.