Literature DB >> 29430367

Draft genome sequence of Penicillium chrysogenum strain HKF2, a fungus with potential for production of prebiotic synthesizing enzymes.

Vaibhav V Gujar1,2, Priya Fuke1, Anshuman A Khardenavis1,2, Hemant J Purohit1.   

Abstract

In this study, we have characterized a novel set of extracellular enzymes produced by Penicillium chrysogenum strain HKF2. A draft genome data of 31.5 Mbp was generated and annotation suggested a total of 11,243 protein-coding genes out of which 609 were CAZymes, majority of which were found to have homology with Penicillium rubens, Penicillium chrysogenum followed by Penicillium expansum and Penicillium roqueforti. The prominent CAZyme genes identified in the draft genome encoded for enzymes involved in the production of prebiotics such as inulo-oligosaccharides and fructo-oligosaccharides. Corresponding enzyme assay indicated that the isolate possessed the potential to produce 11.8 and 3.8 U/mL of β-fructofuranosidase and inulinase, respectively. This study highlights the significance of Effluent Treatment Plants as novel and under-explored niche for isolation of fungi having the potential for production of prebiotics synthesizing enzymes.

Entities:  

Keywords:  CAZymes; Draft genome; Penicillium; Prebiotic

Year:  2018        PMID: 29430367      PMCID: PMC5794679          DOI: 10.1007/s13205-018-1132-3

Source DB:  PubMed          Journal:  3 Biotech        ISSN: 2190-5738            Impact factor:   2.406


  16 in total

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4.  Draft genome sequence of Talaromyces islandicus ("Penicillium islandicum") WF-38-12, a neglected mold with significant biotechnological potential.

Authors:  Thomas Schafhauser; Daniel Wibberg; Christian Rückert; Anika Winkler; Liane Flor; Karl-Heinz van Pée; David P Fewer; Kaarina Sivonen; Linda Jahn; Jutta Ludwig-Müller; Thibault Caradec; Philippe Jacques; Mieke M E Huijbers; Willem J H van Berkel; Tilmann Weber; Wolfgang Wohlleben; Jörn Kalinowski
Journal:  J Biotechnol       Date:  2015-07-18       Impact factor: 3.307

Review 5.  Galacto-oligosaccharide production using microbial beta-galactosidase: current state and perspectives.

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Journal:  Appl Microbiol Biotechnol       Date:  2009-11-27       Impact factor: 4.813

6.  Characterization of antibacterial activity of bikaverin from Fusarium sp. HKF15.

Authors:  Radhika Deshmukh; Anoop Mathew; Hemant J Purohit
Journal:  J Biosci Bioeng       Date:  2013-10-31       Impact factor: 2.894

7.  dbCAN: a web resource for automated carbohydrate-active enzyme annotation.

Authors:  Yanbin Yin; Xizeng Mao; Jincai Yang; Xin Chen; Fenglou Mao; Ying Xu
Journal:  Nucleic Acids Res       Date:  2012-05-29       Impact factor: 16.971

8.  SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler.

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Journal:  Gigascience       Date:  2012-12-27       Impact factor: 6.524

9.  Genome sequence of the necrotrophic fungus Penicillium digitatum, the main postharvest pathogen of citrus.

Authors:  Marina Marcet-Houben; Ana-Rosa Ballester; Beatriz de la Fuente; Eleonora Harries; Jose F Marcos; Luis González-Candelas; Toni Gabaldón
Journal:  BMC Genomics       Date:  2012-11-21       Impact factor: 3.969

10.  High-throughput functional annotation and data mining with the Blast2GO suite.

Authors:  Stefan Götz; Juan Miguel García-Gómez; Javier Terol; Tim D Williams; Shivashankar H Nagaraj; María José Nueda; Montserrat Robles; Manuel Talón; Joaquín Dopazo; Ana Conesa
Journal:  Nucleic Acids Res       Date:  2008-04-29       Impact factor: 16.971

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  5 in total

1.  Paenibacillus polymyxa ND25: candidate genome for lignocellulosic biomass utilization.

Authors:  Varsha Bohra; Nishant A Dafale; Hemant J Purohit
Journal:  3 Biotech       Date:  2018-05-08       Impact factor: 2.406

Review 2.  Omics Approaches Applied to Penicillium chrysogenum and Penicillin Production: Revealing the Secrets of Improved Productivity.

Authors:  Carlos García-Estrada; Juan F Martín; Laura Cueto; Carlos Barreiro
Journal:  Genes (Basel)       Date:  2020-06-26       Impact factor: 4.096

3.  Optimization of Inulin Hydrolysis by Penicillium lanosocoeruleum Inulinases and Efficient Conversion Into Polyhydroxyalkanoates.

Authors:  Iolanda Corrado; Nicoletta Cascelli; Georgia Ntasi; Leila Birolo; Giovanni Sannia; Cinzia Pezzella
Journal:  Front Bioeng Biotechnol       Date:  2021-03-01

Review 4.  Insight into the Genome of Diverse Penicillium chrysogenum Strains: Specific Genes, Cluster Duplications and DNA Fragment Translocations.

Authors:  Juan F Martín
Journal:  Int J Mol Sci       Date:  2020-05-30       Impact factor: 5.923

5.  Fungal secretome profile categorization of CAZymes by function and family corresponds to fungal phylogeny and taxonomy: Example Aspergillus and Penicillium.

Authors:  Kristian Barrett; Kristian Jensen; Anne S Meyer; Jens C Frisvad; Lene Lange
Journal:  Sci Rep       Date:  2020-03-20       Impact factor: 4.379

  5 in total

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