Literature DB >> 29744280

Paenibacillus polymyxa ND25: candidate genome for lignocellulosic biomass utilization.

Varsha Bohra1, Nishant A Dafale1, Hemant J Purohit1.   

Abstract

Genome sequence of Paenibacillus polymyxa ND25 isolated from cow rumen is reported for being a potential candidate in hydrolysis of lignocellulosic plant biomass. Draft genome sequence generated 5.73 Mb data containing 4922 putative protein coding genes, of which 140 are annotated for glycoside hydrolases. P. polymyxa ND25 strain comprises diverse lignocellulolytic components, especially 12 cellulase along with 23 hemicellulases and 11 esterases, signifying its potential for lignocellulose hydrolysis. Subsequent enzyme assay exhibited the potential of strain to produce 0.49, 0.24 and 0.44 U/ml U/ml of endoglucanase, exoglucanase and β-glucosidase, respectively, utilizing sugarcane bagasse as the sole carbon source. This study signifies the efficient application of P. polymyxa ND25 for facilitating plant-biomass utilization.

Entities:  

Keywords:  Cellulase; Esterase; Genome; Glycoside hydrolases; Hemicellulase; Paenibacillus polymyxa ND25

Year:  2018        PMID: 29744280      PMCID: PMC5940624          DOI: 10.1007/s13205-018-1274-3

Source DB:  PubMed          Journal:  3 Biotech        ISSN: 2190-5738            Impact factor:   2.406


  16 in total

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Authors:  Neeraj Kumar Aggarwal; Varsha Goyal; Anita Saini; Anita Yadav; Ranjan Gupta
Journal:  3 Biotech       Date:  2017-06-16       Impact factor: 2.406

Review 2.  Lignocellulose deconstruction in the biosphere.

Authors:  Yannick J Bomble; Chien-Yuan Lin; Antonella Amore; Hui Wei; Evert K Holwerda; Peter N Ciesielski; Bryon S Donohoe; Stephen R Decker; Lee R Lynd; Michael E Himmel
Journal:  Curr Opin Chem Biol       Date:  2017-11-02       Impact factor: 8.822

3.  Enrichment and identification of cellulolytic bacteria from the gastrointestinal tract of Giant African snail, Achatina fulica.

Authors:  Kiran D Pawar; Mudasir A Dar; Bharati P Rajput; Girish J Kulkarni
Journal:  Appl Biochem Biotechnol       Date:  2014-11-29       Impact factor: 2.926

4.  Enzyme activities of aerobic lignocellulolytic bacteria isolated from wet tropical forest soils.

Authors:  Hannah L Woo; Terry C Hazen; Blake A Simmons; Kristen M DeAngelis
Journal:  Syst Appl Microbiol       Date:  2013-11-14       Impact factor: 4.022

5.  The characteristics of a new non-spore-forming cellulolytic mesophilic anaerobe strain CM126 isolated from municipal sewage sludge.

Authors:  S Nitisinprasert; A Temmes
Journal:  J Appl Bacteriol       Date:  1991-08

6.  Selection of indicator bacteria based on screening of 16S rDNA metagenomic library from a two-stage anoxic-oxic bioreactor system degrading azo dyes.

Authors:  Nishant Dafale; Leena Agrawal; Atya Kapley; Sudhir Meshram; Hemant Purohit; Satish Wate
Journal:  Bioresour Technol       Date:  2009-09-11       Impact factor: 9.642

7.  dbCAN: a web resource for automated carbohydrate-active enzyme annotation.

Authors:  Yanbin Yin; Xizeng Mao; Jincai Yang; Xin Chen; Fenglou Mao; Ying Xu
Journal:  Nucleic Acids Res       Date:  2012-05-29       Impact factor: 16.971

8.  The carbohydrate-active enzymes database (CAZy) in 2013.

Authors:  Vincent Lombard; Hemalatha Golaconda Ramulu; Elodie Drula; Pedro M Coutinho; Bernard Henrissat
Journal:  Nucleic Acids Res       Date:  2013-11-21       Impact factor: 16.971

9.  Decoding the complete arsenal for cellulose and hemicellulose deconstruction in the highly efficient cellulose decomposer Paenibacillus O199.

Authors:  Rubén López-Mondéjar; Daniela Zühlke; Tomáš Větrovský; Dörte Becher; Katharina Riedel; Petr Baldrian
Journal:  Biotechnol Biofuels       Date:  2016-05-14       Impact factor: 6.040

10.  Isolation, identification and characterization of Paenibacillus polymyxa CR1 with potentials for biopesticide, biofertilization, biomass degradation and biofuel production.

Authors:  Brian Weselowski; Naeem Nathoo; Alexander William Eastman; Jacqueline MacDonald; Ze-Chun Yuan
Journal:  BMC Microbiol       Date:  2016-10-18       Impact factor: 3.605

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  5 in total

1.  Revealing the potential of Klebsiella pneumoniae PVN-1 for plant beneficial attributes by genome sequencing and analysis.

Authors:  Varsha Jha; Hemant Purohit; Nishant A Dafale
Journal:  3 Biotech       Date:  2021-10-25       Impact factor: 2.406

2.  Complete genome sequence of Rhodothermaceae bacterium RA with cellulolytic and xylanolytic activities.

Authors:  Kok Jun Liew; Seng Chong Teo; Mohd Shahir Shamsir; Rajesh Kumar Sani; Chun Shiong Chong; Kok-Gan Chan; Kian Mau Goh
Journal:  3 Biotech       Date:  2018-08-13       Impact factor: 2.406

3.  Coconut Mesocarp-Based Lignocellulosic Waste as a Substrate for Cellulase Production from High Promising Multienzyme-Producing Bacillus amyloliquefaciens FW2 without Pretreatments.

Authors:  Van Hong Thi Pham; Jaisoo Kim; Jeahong Shim; Soonwoong Chang; Woojin Chung
Journal:  Microorganisms       Date:  2022-01-31

4.  Hybrid Genome Assembly for Predicting Functional Potential of a Novel Streptomyces Strain as Plant Biomass Valorisation Agent.

Authors:  Hitesh Tikariha; Shruti Pavagadhi; Sevugan Mayalagu; Miko Chin Hong Poh; Sanjay Swarup
Journal:  Indian J Microbiol       Date:  2021-04-22

Review 5.  A Review on Bacterial Contribution to Lignocellulose Breakdown into Useful Bio-Products.

Authors:  Ogechukwu Bose Chukwuma; Mohd Rafatullah; Husnul Azan Tajarudin; Norli Ismail
Journal:  Int J Environ Res Public Health       Date:  2021-06-03       Impact factor: 3.390

  5 in total

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