| Literature DB >> 29423198 |
Haresh Selvaskandan1, Izabella Pawluczyk1, Jonathan Barratt1.
Abstract
IgA nephropathy (IgAN) is the most common cause of primary glomerulonephritis worldwide. Up to 30% of cases develop the progressive form of the disease, eventually requiring renal replacement therapy. Diagnosis and risk stratification relies on an invasive kidney biopsy and management options are limited, with recurrence following renal transplantation being common. Thus the quest to understand the pathophysiology of IgAN has been one of great importance. MicroRNAs (miRs) are short nucleotides that suppress gene expression by hybridizing to the 3' untranslated region of messenger RNA (mRNAs), promoting mRNA degradation or disrupting translation. First discovered in 1993, miRs have since been implicated in a number of chronic conditions, including cancer, heart disease and kidney disease. The mounting interest in the field of miRs has led to fascinating developments in the field of nephrology, ranging from their roles as biomarkers for disease to the development of miR antagonists as avenues for treatment. The translational potential for miRs in IgAN is thus well grounded and may represent a paradigm shift in current approaches to the disease. This review aims to summarize the literature with regard to miRs and their roles in IgAN.Entities:
Keywords: IgA nephropathy; biomarkers; epigenetic; microRNA; therapy
Year: 2017 PMID: 29423198 PMCID: PMC5798124 DOI: 10.1093/ckj/sfx096
Source DB: PubMed Journal: Clin Kidney J ISSN: 2048-8505
Fig. 1(A) The biogenesis of miRs. (1) The biogenesis of miRs begins in the nucleus, with the production of a hairpin loop transcript known as a primary miR (pri-miR), under the action of RNA polymerase. (2) The pri-miR undergoes post-transcriptional editing by the action of Drosha, an RNAse, supported by the action of DGCR8. This process cleaves the pri-miR at its 5′ and 3′ regions to produce a precursor miR (pre-miR). (3) The pre-miR is exported out of the cell in complex with exportin 5–Ran-GTP, which also prevents degradation of the edited transcript. (4) The pre-miR then undergoes further editing under the action of Dicer, which cleaves the loop structure to produce a double-stranded RNA. (5) The strands are separated by helicases to produce a passenger strand that is left exposed in the cytoplasm and is thus swiftly degraded. (6) The remaining functional strand is the final mature miR. (7) The mature miR is then complexed with argonaute proteins to form the RISC. This complex moves on to degrade mRNA or disrupt translation, guided by the complementarity of the mature miR within the complex. (B) Extracelluar miRs. Extracellular miRs can be found within apoptotic bodies (released during cell apoptosis) or exosomes or in complex with argonaute proteins or high-density lipoproteins (HDLs). Of the extracellular miRs, 95–99% are argonaute bound, making this the predominant miR complex in biological fluids. Extracellular miRs can thus travel to target cells either locally within the tissue space or to distant target cells via the vasculature or lymphatic system. Here, they are able to silence gene expression following uptake into target cells. The mechanisms of secretion and uptake of extracellular miRs are yet to be clarified, although several hypotheses exist.
miRs differentially expressed in at least two different studies in IgA N
| Tissue control used | Renal tissue | Renal tissue | PMBCs | SIgA HRMCs | Urinary sediment | Urinary sediment |
|---|---|---|---|---|---|---|
| 15b | ↑ | ↓ | ||||
| 17 | ↓ | ↑ | ||||
| 23a | ↑ | ↓ | ||||
| 30a-5p | ↑ | ↓ | ||||
| 30d | ↓ | ↓ | ||||
| 98 | ↑ | ↑ | ||||
| 99a | ↓ | ↓ | ||||
| 128 | ↓ | ↑ | ||||
| 133a | ↓ | ↑ | ||||
| 133b | ↓ | ↑ | ||||
| 134 | ↑ | ↑ | ||||
| 148b | ↓ | ↑ | ||||
| 150 | ↓ | ↑ | ↑ | ↑ | ||
| 185 | ↑ | ↑ | ||||
| 195 | ↓ | ↑ | ||||
| 199b-3p | ↓ | ↑ | ||||
| 221 | ↓ | ↑ | ||||
| 223 | ↓ | ↓ | ↑ | |||
| 374b | ↓ | ↑ | ||||
| 486 | ↓ | ↑ | ↑ | |||
| 502-3p | ↓ | ↑ | ||||
| 572 | ↑ | ↑ | ||||
| 615 | ↓ | ↓ | ||||
| 625 | ↓ | ↑ | ||||
| 628 | ↑ | ↓ | ||||
| 3613-3p | ↓ | ↓ | ||||
| let-7a | ↑ | ↓ | ↑ | |||
| let-7c | ↓ | ↑ | ||||
| let-7d | ↓ | ↑ |
miRs differentially regulated in at least two microarray/RNA sequencing studies. ↑, increased expression compared with controls (≥2.0 fold); ↓, reduced expression compared with controls (≤0.5 fold).
Dai et al. [29]; microarray analysis of IgAN renal tissue compared with healthy controls.
Tan et al. [30]; RNA sequencing of IgAN renal tissues compared with healthy controls.
Serino et al. [32]; microarray analysis of IgAN PMBCs compared with healthy controls.
Liang et al. [31]); microarray analysis of HRMCs stimulated with secretory IgA from patients compared to stimulation with secretory IgA from healthy controls.
Wang et al. [33]; microarray analysis of IgAN urinary sediment compared with healthy and disease controls.
Duan et al. [36]; microarray analysis of IgAN urinary sediment compared with healthy and disease controls.
miR expression in IgAN with clinical correlates
| Study | Tissue | miR | eGFR correlation | Proteinuria correlation | Histopathology associations | Renal failure risk | Other mRNA correlations |
|---|---|---|---|---|---|---|---|
| Hennino | Kidney | 21-5p | Interstitial/glomerular fibrosis | HR 4.08 (95% CI 1.32–12.55) | |||
| 199a-5p | |||||||
| 214-3p | HR 3.81 (95% CI 1.06–13.74) | ||||||
| Wang | Kidney | 200c | Positive | Correlated with E-cadherin | |||
| 205 | Positive | Tubular interstitial fibrosis | |||||
| 192 | Correlated with rate of decline | Glomerular fibrosis | |||||
| 141 | Inverse correlation with vimentin | ||||||
| Wang | Kidney | 146a | Inverse | Positive | |||
| 155 | Inverse | Positive | Tubular interstitial fibrosis | ||||
| Bao | Kidney | 21 | Interstitial/glomerular fibrosis | ||||
| Wang | Urinary sediment | 146a | Positive | Inverse correlation with urinary IL-1β, IL-6 and TNF-α. Positive correlation with RANTES | |||
| 155 | Positive | Inverse correlation with urinary IL-1β and TNF-α. Positive correlation with RANTES and FOXP3 | |||||
| Szeto | Urinary sediment | 15 | Positive | Inverse | |||
| 17 | Positive | ||||||
| 192 | Positive | Inverse | |||||
| 216a | Inverse | ||||||
| 217 | Positive | Tubular interstitial fibrosis (inverse correlation) | |||||
| 377 | Tubular interstitial fibrosis | ||||||
| Wang | Urinary sediment | 21 | Positive | Positive correlation with SMAD3 | |||
| 29b | Positive | Positive | Positive correlation with SMAD3 | ||||
| 29c | Positive | Positive correlation with SMAD3 | |||||
| 93 | Glomerular fibrosis | Positive correlation with SMAD3 | |||||
| Wang | Urinary sediment | 200a | Positive | Inverse correlation with vimentin | |||
| 200b | Correlated with rate of decline | Positive | Inverse correlation with vimentin, ZEB2 | ||||
| 429 | Positive | Positive | Glomerular fibrosis (inverse correlation) | Inverse correlation with vimentin | |||
| Hu | Bcells | 374b | Positive | Correlates with MEST score | |||
| Bao | GECs | 233 | Positive | Correlation with glomerular endothelial proliferation |
GECs, Glomerular Endothelial Cells; MEST, mesangial hypercellularity, endocapillary hypercellularity, segmental glomerulosclerosis, tubular atrophy/interstitial fibrosis; RANTES, regulated on activation, normal T cell expressed and secreted.
Fig. 2.MicroRNAs and the four-hit hypothesis. (A) IgA1 is O-galactosylated in B cells under the action of C1GALT, GALNT2 and the chaperone protein Cosmc. miRs 148b, let-7b and 347b suppress these proteins, respectively, and thus their increased expression generates poorly O-galactosylated IgA1 O-glycoforms. (B) Hit 1 and Hit 2. The first hit of the four-hit hypothesis is the generation of poorly O-galactosylated IgA1, the second is the generation of anti-IgA1 hinge IgG antibodies. (C) Hit 3. As poorly O-galactosylated IgA1 is targeted by anti-IgA1, IgA1–IgG immune complexes are formed in circulation. (D) Hit 4. Deposition of IgA–IgG immune complexes in the kidneys results in an inflammatory process leading to glomerulonephritis, fibrosis and eventually CKD. miRs in mesangial cells: miRs 16, 100-3p and 877-3p are down-regulated in mesangial cells stimulated by secretory IgA taken from IgAN patients [31, 56]. These miRs suppress IL-6, IL-8 and IL-1β, respectively, resulting in overactivity of these cytokines in IgAN. miRs in endothelial cells: IL-6 produced by mesangial cells suppresses miR-233 in GEnCs, increasing p65 and STAT3 activity, promoting local inflammatory effects [47]. miRs in podocytes: miR-26a expression is low in the glomeruli of IgAN patients. Its expression positively correlates with markers of healthy podocyte function [60]. miRs in proximal tubular cells: miR-29c, a known suppressor of extracellular matrix proteins, is reduced in expression in IgAN [58, 59]. miRs of the interstitium: miR-21 increases in IgAN, promoting EMT [41].