| Literature DB >> 29419733 |
Yanqing Gao1, Jingjing Li2, Jian Li3, Zhanqian Song4, Shibin Shang5, Xiaoping Rao6.
Abstract
Turpentine is a volatile component of resin, which is an abundant forest resource in Southern China. As one of the most important components, the integrated application of β-pinene has been studied. The broad-spectrum evaluation of β-pinene and its analogues has, therefore, been necessary. In an attempt to expand the scope of agro-activity trials, the preparation and the evaluation of the herbicidal activity of a series of β-pinene analogues against three agricultural herbs were carried out. In accordance with the overall herbicidal activity, it is noteworthy that compounds 6k, 6l, and 6m demonstrated extreme activity with IC50 values of 0.065, 0.065, and 0.052 mol active ingredients/hectare against E. crus-galli. The preliminary structure-activity relationship (SAR) was analyzed and the compounds with the appropriate volatility and substituent type that had beneficial herbicidal activity were analyzed. Simultaneously, the quantitative structure-activity relationship (QSAR) model was built and the most important structural features were indicated, which was, to a certain extent, in line with the SAR study. The study aimed to study the application of the forest resource turpentine in agriculture as a potential and alternative approach for comprehensive utilization.Entities:
Keywords: QSAR; SAR; herbicidal activity; turpentine
Mesh:
Substances:
Year: 2018 PMID: 29419733 PMCID: PMC6017721 DOI: 10.3390/molecules23020356
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Scheme 1Structure and chemical synthesis of the compounds 5a–5l.
Scheme 2Structure and chemical synthesis of the compounds 6a–6n.
Herbicidal activity of compounds against E. crus-galli in a seed germination method.
| Compd. | Herbicidal Activity at a Concentration of (g Active Ingredients/Hectare) | IC50 | log IC50 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| 200 | 100 | 50 | 25 | 12.5 | g Active Ingredients/Hectare | mol Active Ingredients/Hectare | ||||
| 80 | 68 | 55 | 45 | 32 | 49.880 | 0.300 | 0.962 | −0.523 | ||
| 100 | 91 | 72 | 57 | 42 | 19.886 | 0.110 | 0.991 | −0.959 | ||
| 100 | 90 | 71 | 56 | 41 | 21.204 | 0.109 | 0.989 | −0.963 | ||
| 100 | 90 | 70 | 55 | 41 | 22.024 | 0.106 | 0.993 | −0.975 | ||
| 100 | 90 | 70 | 54 | 40 | 23.099 | 0.111 | 0.993 | −0.955 | ||
| 96 | 80 | 68 | 50 | 39 | 25.505 | 0.115 | 0.983 | −0.939 | ||
| 90 | 78 | 64 | 50 | 39 | 25.679 | 0.116 | 0.949 | −0.936 | ||
| 100 | 90 | 69 | 53 | 40 | 23.908 | 0.108 | 0.996 | −0.967 | ||
| 91 | 78 | 65 | 49 | 40 | 25.335 | 0.114 | 0.959 | −0.943 | ||
| 92 | 81 | 64 | 50 | 38 | 26.605 | 0.113 | 0.951 | −0.947 | ||
| 88 | 76 | 60 | 50 | 40 | 27.573 | 0.103 | 0.959 | −0.987 | ||
| 75 | 60 | 49 | 42 | 35 | 64.910 | 0.309 | 0.972 | −0.510 | ||
| 80 | 60 | 48 | 41 | 35 | 63.125 | 0.249 | 0.994 | −0.604 | ||
| 100 | 96 | 77 | 61 | 40 | 18.905 | 0.069 | 0.990 | −1.161 | ||
| 100 | 96 | 76 | 61 | 43 | 17.510 | 0.061 | 0.994 | −1.215 | ||
| 95 | 84 | 65 | 58 | 37 | 21.708 | 0.068 | 0.954 | −1.167 | ||
| 93 | 81 | 64 | 55 | 40 | 21.115 | 0.071 | 0.965 | −1.149 | ||
| 85 | 74 | 59 | 50 | 41 | 26.975 | 0.076 | 0.950 | −1.119 | ||
| 100 | 95 | 74 | 60 | 40 | 19.723 | 0.073 | 0.989 | −1.137 | ||
| 90 | 76 | 61 | 54 | 40 | 23.711 | 0.107 | 0.967 | −0.971 | ||
| 88 | 73 | 60 | 54 | 41 | 23.411 | 0.100 | 0.969 | −1.000 | ||
| 98 | 85 | 69 | 57 | 40 | 20.229 | 0.075 | 0.990 | −1.125 | ||
| 93 | 79 | 63 | 55 | 42 | 20.196 | 0.071 | 0.982 | −1.149 | ||
| 100 | 98 | 78 | 60 | 45 | 17.182 | 0.065 | 0.993 | −1.187 | ||
| 100 | 97 | 79 | 63 | 44 | 16.004 | 0.065 | 0.995 | −1.187 | ||
| 100 | 95 | 77 | 60 | 46 | 15.714 | 0.052 | 0.998 | −1.284 | ||
| 100 | 95 | 75 | 61 | 40 | 19.077 | 0.070 | 0.987 | −1.155 | ||
| Sulfentrazone | 100 | 80 | 69 | 55 | 39 | 15.743 | 0.041 | 0.999 | −1.387 | |
Values in columns followed by similar letters were not significantly different according to Fisher’s protected; LSD test (P = 0.05).
Figure 1The “breaking point” rule results. The black code indicates a statistically notable improvement in the correlation coefficient, and the red code indicates it was not improving obviously.
The best four-descriptor model.
| Descriptor No. | ±Δ | Descriptor | ||
|---|---|---|---|---|
| 0 | −4.5445 | 7.3386 × 10−1 | −6.1926 | Intercept |
| 1 | −2.5592 × 10−3 | 2.3118 × 10−4 | −11.0701 | Δ |
| 2 | 2.8334 | 3.8752 × 10−1 | 7.3116 | |
| 3 | 7.7801 × 10−2 | 1.0981 × 10−2 | 7.0850 | |
| 4 | −3.4698 × 10−1 | 1.5347 × 10−1 | −2.2609 |
a Final heat of formation of atoms. b Max atomic orbital electronic population. c Tot dipole of the molecule. d Max net atomic charge for a O atom.
The difference between the experimental log IC50 and predicted log IC50.
| No. | Compd. | Calc. Log IC50 | Exp. Log IC50 | Difference |
|---|---|---|---|---|
| 1 | −0.884 | −0.959 | 0.075 | |
| 2 | −0.907 | −0.963 | 0.056 | |
| 3 | −0.926 | −0.975 | 0.049 | |
| 4 | −0.964 | −0.955 | −0.009 | |
| 5 | −0.942 | −0.939 | −0.003 | |
| 6 | −0.952 | −0.936 | −0.016 | |
| 7 | −0.975 | −0.967 | −0.008 | |
| 8 | −0.979 | −0.943 | −0.036 | |
| 9 | −0.949 | −0.947 | −0.002 | |
| 10 | −0.990 | −0.987 | 0.003 | |
| 11 | −0.534 | −0.510 | −0.024 | |
| 12 | −0.628 | −0.604 | −0.024 | |
| 13 | −1.163 | −1.161 | −0.002 | |
| 14 | −1.220 | −1.215 | −0.005 | |
| 15 | −1.023 | −1.167 | 0.044 | |
| 16 | −1.079 | −1.149 | 0.070 | |
| 17 | −1.102 | −1.119 | 0.017 | |
| 18 | −1.067 | −1.137 | 0.070 | |
| 19 | −1.011 | −0.971 | −0.040 | |
| 20 | −1.027 | −1.000 | −0.027 | |
| 21 | −1.183 | −1.125 | −0.058 | |
| 22 | −1.225 | −1.149 | −0.076 | |
| 23 | −1.152 | −1.187 | 0.035 | |
| 24 | −1.109 | −1.187 | 0.078 | |
| 25 | −1.338 | −1.284 | −0.054 | |
| 26 | −1.162 | −1.155 | −0.007 |
Figure 2The comparison between experimental log IC50 and predicted log IC50.
Figure 3The HOMO and LUMO energy maps for compounds 6k, 6l and 6m.
Figure 4The molecular electrostatic potential and contour maps of compounds 6k, 6l and 6m.
Figure 5The optimized geometries and charge distribution of compounds 6k, 6l and 6m.