| Literature DB >> 29416891 |
Bakhytzhan Baptayev1, Salimgerey Adilov2,1.
Abstract
The whole mol-ecule of the title porphyrin, C46H32Entities:
Keywords: C—H⋯O hydrogen bonding; crystal structure; porphyrins; solvate
Year: 2018 PMID: 29416891 PMCID: PMC5778485 DOI: 10.1107/S2056989017017868
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title compound, with the atom labelling. Displacement ellipsoids are drawn at the 50% probability level. Unlabelled atoms are related to labelled atoms by inversion symmetry (symmetry operation: −x, 2 − y, −z), and only one solvent molecule is shown.
Figure 2A partial view along the b axis of the crystal packing of the title compound. The C—H⋯O hydrogen bonds are shown as dashed lines (see Table 1 ▸).
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C12—H12⋯O2i | 0.95 (1) | 2.45 (1) | 3.355 (3) | 159 (1) |
| C104—H104⋯O102i | 0.95 (1) | 2.58 (1) | 3.272 (4) | 130 (1) |
Symmetry code: (i) .
Figure 3A view along the a axis of the interlayer stacking in the crystal of the title compound, also showing the intercalation of the nitrobenzene groups between the layers.
Experimental details
| Crystal data | |
| Chemical formula | C46H32N6O4·2C6H5NO2 |
|
| 979.03 |
| Crystal system, space group | Triclinic, |
| Temperature (K) | 193 |
|
| 7.957 (3), 9.656 (3), 16.568 (5) |
| α, β, γ (°) | 76.710 (5), 79.440 (5), 78.173 (5) |
|
| 1200.1 (7) |
|
| 1 |
| Radiation type | Mo |
| μ (mm−1) | 0.09 |
| Crystal size (mm) | 0.2 × 0.15 × 0.1 |
| Data collection | |
| Diffractometer | Bruker SMART CCD area detector |
| Absorption correction | Multi-scan ( |
|
| 0.830, 0.991 |
| No. of measured, independent and observed [ | 7891, 5512, 4072 |
|
| 0.066 |
| (sin θ/λ)max (Å−1) | 0.658 |
| Refinement | |
|
| 0.064, 0.189, 1.05 |
| No. of reflections | 5512 |
| No. of parameters | 334 |
| H-atom treatment | All H-atom parameters refined |
| Δρmax, Δρmin (e Å−3) | 0.80, −0.37 |
Computer programs: SMART and SAINT (Bruker, 2005 ▸), SIR2004 (Burla et al., 2007 ▸), Olex2.refine (Bourhis et al., 2015 ▸), OLEX2 (Dolomanov et al., 2009 ▸), Mercury (Macrae et al., 2008 ▸), SHELXTL (Sheldrick, 2008 ▸) and publCIF (Westrip, 2010 ▸).
| C46H32N6O4·2C6H5NO2 | |
| Triclinic, | |
| Mo | |
| Cell parameters from 832 reflections | |
| θ = 5.5–55.4° | |
| α = 76.710 (5)° | µ = 0.09 mm−1 |
| β = 79.440 (5)° | |
| γ = 78.173 (5)° | Plate, dark red |
| 0.2 × 0.15 × 0.1 mm |
| Bruker SMART CCD area detector diffractometer | 5512 independent reflections |
| Radiation source: fine-focus sealed tube | 4072 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 27.9°, θmin = 1.3° |
| Absorption correction: multi-scan (SADABS; Bruker, 2005) | |
| 7891 measured reflections |
| Refinement on | 42 constraints |
| Least-squares matrix: full | Primary atom site location: structure-invariant direct methods |
| All H-atom parameters refined | |
| (Δ/σ)max = 0.001 | |
| 5512 reflections | Δρmax = 0.80 e Å−3 |
| 334 parameters | Δρmin = −0.37 e Å−3 |
| 0 restraints |
| Occ. (<1) | |||||
| C1 | −0.4023 (2) | 1.1991 (2) | −0.03569 (12) | 0.0242 (4) | |
| N1 | −0.2172 (2) | 1.08626 (18) | 0.07401 (10) | 0.0253 (4) | |
| H1 | −0.1213 (2) | 1.05861 (18) | 0.04157 (10) | 0.0304 (4)* | 0.500000 |
| O1 | −1.0421 (2) | 1.6738 (2) | −0.15516 (13) | 0.0524 (5) | |
| C2 | −0.3711 (2) | 1.1584 (2) | 0.04770 (13) | 0.0254 (4) | |
| N2 | 0.1210 (2) | 0.91439 (18) | 0.10379 (10) | 0.0249 (4) | |
| H2 | 0.0670 (2) | 0.94670 (18) | 0.05953 (10) | 0.0299 (4)* | 0.500000 |
| O2 | −1.1746 (2) | 1.4941 (2) | −0.09963 (14) | 0.0598 (6) | |
| C3 | −0.4958 (3) | 1.1826 (2) | 0.11990 (13) | 0.0293 (4) | |
| H3 | −0.6126 (3) | 1.2307 (2) | 0.11960 (13) | 0.0351 (5)* | |
| N3 | −1.0444 (2) | 1.5482 (2) | −0.11856 (12) | 0.0348 (4) | |
| C4 | −0.4157 (3) | 1.1240 (2) | 0.18851 (13) | 0.0294 (4) | |
| H4 | −0.4667 (3) | 1.1223 (2) | 0.24519 (13) | 0.0353 (5)* | |
| C5 | −0.2391 (3) | 1.0648 (2) | 0.15975 (13) | 0.0257 (4) | |
| C6 | −0.1130 (3) | 0.9975 (2) | 0.21153 (12) | 0.0258 (4) | |
| C7 | 0.0548 (3) | 0.9304 (2) | 0.18412 (12) | 0.0263 (4) | |
| C8 | 0.1855 (3) | 0.8648 (3) | 0.23783 (13) | 0.0331 (5) | |
| H8 | 0.1742 (3) | 0.8620 (3) | 0.29623 (13) | 0.0397 (6)* | |
| C9 | 0.3270 (3) | 0.8079 (3) | 0.18946 (13) | 0.0328 (5) | |
| H9 | 0.4332 (3) | 0.7571 (3) | 0.20771 (13) | 0.0394 (6)* | |
| C10 | 0.2867 (2) | 0.8387 (2) | 0.10502 (12) | 0.0253 (4) | |
| C11 | −0.5730 (2) | 1.2911 (2) | −0.05372 (12) | 0.0245 (4) | |
| C12 | −0.5801 (3) | 1.4362 (2) | −0.08993 (16) | 0.0356 (5) | |
| H12 | −0.4777 (3) | 1.4775 (2) | −0.10072 (16) | 0.0427 (6)* | |
| C13 | −0.7349 (3) | 1.5219 (2) | −0.11066 (15) | 0.0360 (5) | |
| H13 | −0.7399 (3) | 1.6216 (2) | −0.13496 (15) | 0.0432 (6)* | |
| C14 | −0.8809 (2) | 1.4592 (2) | −0.09523 (13) | 0.0274 (4) | |
| C15 | −0.8795 (3) | 1.3162 (3) | −0.05707 (17) | 0.0395 (6) | |
| H15 | −0.9830 (3) | 1.2761 (3) | −0.04532 (17) | 0.0474 (7)* | |
| C16 | −0.7239 (3) | 1.2319 (2) | −0.03617 (16) | 0.0370 (5) | |
| H16 | −0.7207 (3) | 1.1332 (2) | −0.00974 (16) | 0.0443 (6)* | |
| C17 | −0.1603 (3) | 0.9982 (2) | 0.30326 (12) | 0.0274 (4) | |
| C18 | −0.1736 (4) | 1.1229 (3) | 0.33314 (15) | 0.0439 (6) | |
| H18 | −0.1544 (4) | 1.2097 (3) | 0.29475 (15) | 0.0526 (7)* | |
| C19 | −0.2144 (4) | 1.1238 (3) | 0.41821 (16) | 0.0493 (7) | |
| H19 | −0.2223 (4) | 1.2108 (3) | 0.43721 (16) | 0.0591 (8)* | |
| C20 | −0.2439 (3) | 0.9990 (3) | 0.47565 (14) | 0.0382 (5) | |
| C21 | −0.2353 (4) | 0.8755 (3) | 0.44615 (15) | 0.0463 (6) | |
| H21 | −0.2577 (4) | 0.7895 (3) | 0.48459 (15) | 0.0556 (7)* | |
| C22 | −0.1943 (3) | 0.8742 (3) | 0.36067 (14) | 0.0414 (6) | |
| H22 | −0.1895 (3) | 0.7877 (3) | 0.34163 (14) | 0.0497 (7)* | |
| C23 | −0.2861 (4) | 0.9995 (4) | 0.56844 (16) | 0.0555 (8) | |
| H23a | −0.1805 (7) | 0.963 (2) | 0.5947 (3) | 0.0833 (12)* | |
| H23b | −0.332 (3) | 1.0984 (5) | 0.57653 (16) | 0.0833 (12)* | |
| H23c | −0.373 (2) | 0.9378 (19) | 0.5942 (3) | 0.0833 (12)* | |
| C101 | 0.6144 (3) | 0.4878 (3) | 0.62860 (17) | 0.0449 (6) | |
| N101 | 0.4624 (4) | 0.4425 (3) | 0.6107 (2) | 0.0671 (8) | |
| O101 | 0.4858 (4) | 0.3604 (3) | 0.5613 (2) | 0.0894 (9) | |
| C102 | 0.5908 (4) | 0.5772 (3) | 0.68566 (18) | 0.0520 (7) | |
| H102 | 0.4780 (4) | 0.6110 (3) | 0.71179 (18) | 0.0624 (8)* | |
| O102 | 0.3212 (3) | 0.4896 (4) | 0.6447 (3) | 0.1102 (11) | |
| C103 | 0.7342 (4) | 0.6154 (4) | 0.70340 (19) | 0.0574 (8) | |
| H103 | 0.7214 (4) | 0.6759 (4) | 0.74271 (19) | 0.0689 (9)* | |
| C104 | 0.8975 (4) | 0.5666 (3) | 0.66456 (19) | 0.0528 (7) | |
| H104 | 0.9964 (4) | 0.5943 (3) | 0.67696 (19) | 0.0633 (8)* | |
| C105 | 0.9175 (4) | 0.4789 (3) | 0.60842 (18) | 0.0504 (7) | |
| H105 | 1.0305 (4) | 0.4455 (3) | 0.58236 (18) | 0.0605 (8)* | |
| C106 | 0.7757 (4) | 0.4377 (3) | 0.58887 (17) | 0.0472 (6) | |
| H106 | 0.7891 (4) | 0.3771 (3) | 0.54953 (17) | 0.0566 (7)* |
| C1 | 0.0182 (9) | 0.0227 (9) | 0.0314 (10) | −0.0003 (7) | −0.0061 (7) | −0.0052 (8) |
| N1 | 0.0216 (8) | 0.0256 (8) | 0.0279 (9) | 0.0008 (6) | −0.0059 (6) | −0.0060 (7) |
| O1 | 0.0374 (10) | 0.0453 (11) | 0.0675 (13) | 0.0024 (8) | −0.0168 (9) | 0.0018 (9) |
| C2 | 0.0206 (9) | 0.0225 (9) | 0.0323 (10) | 0.0002 (7) | −0.0044 (8) | −0.0066 (8) |
| N2 | 0.0204 (8) | 0.0260 (8) | 0.0276 (8) | 0.0002 (6) | −0.0061 (6) | −0.0054 (7) |
| O2 | 0.0261 (9) | 0.0670 (14) | 0.0843 (15) | −0.0090 (9) | −0.0175 (9) | −0.0028 (11) |
| C3 | 0.0224 (9) | 0.0308 (11) | 0.0326 (11) | 0.0015 (8) | −0.0029 (8) | −0.0084 (8) |
| N3 | 0.0203 (9) | 0.0442 (12) | 0.0388 (10) | −0.0004 (8) | −0.0083 (7) | −0.0074 (9) |
| C4 | 0.0243 (10) | 0.0304 (11) | 0.0315 (11) | 0.0002 (8) | −0.0015 (8) | −0.0084 (8) |
| C5 | 0.0242 (9) | 0.0230 (9) | 0.0294 (10) | −0.0018 (7) | −0.0035 (8) | −0.0063 (8) |
| C6 | 0.0253 (10) | 0.0247 (10) | 0.0273 (10) | −0.0020 (8) | −0.0043 (8) | −0.0063 (8) |
| C7 | 0.0251 (10) | 0.0261 (10) | 0.0272 (10) | −0.0004 (8) | −0.0067 (8) | −0.0059 (8) |
| C8 | 0.0304 (11) | 0.0401 (12) | 0.0271 (10) | 0.0026 (9) | −0.0099 (8) | −0.0064 (9) |
| C9 | 0.0254 (10) | 0.0397 (12) | 0.0309 (11) | 0.0040 (9) | −0.0106 (8) | −0.0054 (9) |
| C10 | 0.0211 (9) | 0.0249 (10) | 0.0298 (10) | −0.0009 (7) | −0.0072 (8) | −0.0047 (8) |
| C11 | 0.0185 (9) | 0.0260 (10) | 0.0289 (10) | −0.0008 (7) | −0.0045 (7) | −0.0070 (8) |
| C12 | 0.0185 (9) | 0.0302 (11) | 0.0546 (14) | −0.0057 (8) | −0.0073 (9) | 0.0015 (10) |
| C13 | 0.0237 (10) | 0.0265 (11) | 0.0529 (14) | −0.0019 (8) | −0.0103 (9) | 0.0034 (10) |
| C14 | 0.0173 (9) | 0.0333 (11) | 0.0309 (10) | 0.0008 (8) | −0.0060 (7) | −0.0073 (8) |
| C15 | 0.0232 (10) | 0.0350 (12) | 0.0637 (16) | −0.0092 (9) | −0.0140 (10) | −0.0068 (11) |
| C16 | 0.0282 (11) | 0.0241 (11) | 0.0595 (15) | −0.0053 (9) | −0.0127 (10) | −0.0044 (10) |
| C17 | 0.0240 (9) | 0.0308 (10) | 0.0259 (10) | 0.0011 (8) | −0.0052 (8) | −0.0068 (8) |
| C18 | 0.0649 (17) | 0.0350 (13) | 0.0320 (12) | −0.0109 (12) | −0.0054 (11) | −0.0064 (10) |
| C19 | 0.0735 (19) | 0.0401 (14) | 0.0374 (13) | −0.0074 (13) | −0.0073 (12) | −0.0167 (11) |
| C20 | 0.0360 (12) | 0.0456 (14) | 0.0303 (11) | 0.0030 (10) | −0.0069 (9) | −0.0092 (10) |
| C21 | 0.0621 (17) | 0.0396 (14) | 0.0324 (12) | −0.0089 (12) | −0.0013 (11) | −0.0019 (10) |
| C22 | 0.0579 (15) | 0.0334 (12) | 0.0321 (12) | −0.0090 (11) | −0.0008 (10) | −0.0082 (9) |
| C23 | 0.0658 (18) | 0.0635 (19) | 0.0312 (13) | 0.0071 (15) | −0.0060 (12) | −0.0139 (12) |
| C101 | 0.0386 (13) | 0.0421 (14) | 0.0511 (15) | −0.0067 (11) | −0.0121 (11) | 0.0008 (11) |
| N101 | 0.0556 (17) | 0.0549 (16) | 0.092 (2) | −0.0197 (13) | −0.0255 (15) | 0.0042 (15) |
| O101 | 0.103 (2) | 0.0722 (17) | 0.111 (2) | −0.0413 (15) | −0.0389 (17) | −0.0134 (16) |
| C102 | 0.0391 (14) | 0.0584 (17) | 0.0512 (16) | 0.0049 (12) | −0.0012 (12) | −0.0121 (13) |
| O102 | 0.0402 (14) | 0.114 (3) | 0.179 (3) | −0.0187 (15) | −0.0151 (16) | −0.029 (2) |
| C103 | 0.0534 (17) | 0.0654 (19) | 0.0557 (17) | 0.0089 (14) | −0.0165 (13) | −0.0266 (15) |
| C104 | 0.0424 (14) | 0.0585 (17) | 0.0599 (17) | −0.0046 (13) | −0.0170 (12) | −0.0125 (14) |
| C105 | 0.0374 (13) | 0.0565 (17) | 0.0517 (15) | −0.0014 (12) | −0.0001 (11) | −0.0103 (13) |
| C106 | 0.0528 (15) | 0.0420 (14) | 0.0444 (14) | −0.0029 (12) | −0.0046 (12) | −0.0103 (11) |
| C1—C2 | 1.400 (3) | C15—H15 | 0.9500 |
| C1—C10i | 1.403 (3) | C15—C16 | 1.390 (3) |
| C1—C11 | 1.501 (2) | C16—H16 | 0.9500 |
| N1—H1 | 0.8800 | C17—C18 | 1.382 (3) |
| N1—C2 | 1.372 (2) | C17—C22 | 1.388 (3) |
| N1—C5 | 1.371 (3) | C18—H18 | 0.9500 |
| O1—N3 | 1.226 (3) | C18—C19 | 1.389 (3) |
| C2—C3 | 1.438 (3) | C19—H19 | 0.9500 |
| N2—H2 | 0.8800 | C19—C20 | 1.386 (4) |
| N2—C7 | 1.370 (3) | C20—C21 | 1.374 (4) |
| N2—C10 | 1.372 (2) | C20—C23 | 1.513 (3) |
| O2—N3 | 1.213 (3) | C21—H21 | 0.9500 |
| C3—H3 | 0.9500 | C21—C22 | 1.396 (3) |
| C3—C4 | 1.357 (3) | C22—H22 | 0.9500 |
| N3—C14 | 1.468 (2) | C23—H23a | 0.9800 |
| C4—H4 | 0.9500 | C23—H23b | 0.9800 |
| C4—C5 | 1.442 (3) | C23—H23c | 0.9800 |
| C5—C6 | 1.399 (3) | C101—N101 | 1.466 (4) |
| C6—C7 | 1.402 (3) | C101—C102 | 1.385 (4) |
| C6—C17 | 1.498 (3) | C101—C106 | 1.378 (4) |
| C7—C8 | 1.444 (3) | N101—O101 | 1.231 (4) |
| C8—H8 | 0.9500 | N101—O102 | 1.210 (4) |
| C8—C9 | 1.352 (3) | C102—H102 | 0.9500 |
| C9—H9 | 0.9500 | C102—C103 | 1.368 (4) |
| C9—C10 | 1.443 (3) | C103—H103 | 0.9500 |
| C11—C12 | 1.385 (3) | C103—C104 | 1.381 (4) |
| C11—C16 | 1.389 (3) | C104—H104 | 0.9500 |
| C12—H12 | 0.9500 | C104—C105 | 1.364 (4) |
| C12—C13 | 1.388 (3) | C105—H105 | 0.9500 |
| C13—H13 | 0.9500 | C105—C106 | 1.382 (4) |
| C13—C14 | 1.374 (3) | C106—H106 | 0.9500 |
| C14—C15 | 1.379 (3) | ||
| C10i—C1—C2 | 125.44 (17) | H15—C15—C14 | 120.65 (12) |
| C11—C1—C2 | 118.19 (17) | C16—C15—C14 | 118.7 (2) |
| C11—C1—C10i | 116.37 (17) | C16—C15—H15 | 120.65 (13) |
| C2—N1—H1 | 126.02 (11) | C15—C16—C11 | 120.4 (2) |
| C5—N1—H1 | 126.02 (10) | H16—C16—C11 | 119.82 (12) |
| C5—N1—C2 | 107.95 (16) | H16—C16—C15 | 119.82 (13) |
| N1—C2—C1 | 125.50 (18) | C18—C17—C6 | 121.0 (2) |
| C3—C2—C1 | 125.69 (17) | C22—C17—C6 | 121.06 (19) |
| C3—C2—N1 | 108.79 (17) | C22—C17—C18 | 118.0 (2) |
| C7—N2—H2 | 126.28 (10) | H18—C18—C17 | 119.36 (14) |
| C10—N2—H2 | 126.28 (11) | C19—C18—C17 | 121.3 (2) |
| C10—N2—C7 | 107.43 (16) | C19—C18—H18 | 119.36 (15) |
| H3—C3—C2 | 126.37 (11) | H19—C19—C18 | 119.68 (15) |
| C4—C3—C2 | 107.25 (18) | C20—C19—C18 | 120.6 (2) |
| C4—C3—H3 | 126.37 (12) | C20—C19—H19 | 119.68 (14) |
| O2—N3—O1 | 123.68 (19) | C21—C20—C19 | 118.4 (2) |
| C14—N3—O1 | 118.12 (18) | C23—C20—C19 | 120.6 (2) |
| C14—N3—O2 | 118.2 (2) | C23—C20—C21 | 121.0 (2) |
| H4—C4—C3 | 126.23 (12) | H21—C21—C20 | 119.43 (15) |
| C5—C4—C3 | 107.55 (18) | C22—C21—C20 | 121.1 (2) |
| C5—C4—H4 | 126.23 (12) | C22—C21—H21 | 119.43 (15) |
| C4—C5—N1 | 108.44 (17) | C21—C22—C17 | 120.6 (2) |
| C6—C5—N1 | 126.46 (18) | H22—C22—C17 | 119.72 (13) |
| C6—C5—C4 | 125.10 (19) | H22—C22—C21 | 119.72 (15) |
| C7—C6—C5 | 125.03 (19) | H23a—C23—C20 | 109.5 |
| C17—C6—C5 | 117.50 (17) | H23b—C23—C20 | 109.5 |
| C17—C6—C7 | 117.47 (17) | H23b—C23—H23a | 109.5 |
| C6—C7—N2 | 126.41 (17) | H23c—C23—C20 | 109.5 |
| C8—C7—N2 | 109.04 (17) | H23c—C23—H23a | 109.5 |
| C8—C7—C6 | 124.54 (19) | H23c—C23—H23b | 109.5 |
| H8—C8—C7 | 126.39 (12) | C102—C101—N101 | 118.9 (3) |
| C9—C8—C7 | 107.22 (18) | C106—C101—N101 | 118.6 (3) |
| C9—C8—H8 | 126.39 (12) | C106—C101—C102 | 122.5 (3) |
| H9—C9—C8 | 126.33 (12) | O101—N101—C101 | 118.2 (3) |
| C10—C9—C8 | 107.34 (18) | O102—N101—C101 | 117.9 (3) |
| C10—C9—H9 | 126.33 (11) | O102—N101—O101 | 123.9 (3) |
| N2—C10—C1i | 126.24 (18) | H102—C102—C101 | 120.88 (16) |
| C9—C10—C1i | 124.76 (17) | C103—C102—C101 | 118.2 (2) |
| C9—C10—N2 | 108.96 (17) | C103—C102—H102 | 120.88 (17) |
| C12—C11—C1 | 119.81 (17) | H103—C103—C102 | 119.77 (17) |
| C16—C11—C1 | 120.80 (18) | C104—C103—C102 | 120.5 (3) |
| C16—C11—C12 | 119.37 (18) | C104—C103—H103 | 119.77 (18) |
| H12—C12—C11 | 119.57 (11) | H104—C104—C103 | 119.89 (18) |
| C13—C12—C11 | 120.86 (19) | C105—C104—C103 | 120.2 (3) |
| C13—C12—H12 | 119.57 (13) | C105—C104—H104 | 119.89 (17) |
| H13—C13—C12 | 120.77 (13) | H105—C105—C104 | 119.47 (17) |
| C14—C13—C12 | 118.5 (2) | C106—C105—C104 | 121.1 (3) |
| C14—C13—H13 | 120.77 (12) | C106—C105—H105 | 119.47 (16) |
| C13—C14—N3 | 118.88 (19) | C105—C106—C101 | 117.5 (3) |
| C15—C14—N3 | 118.92 (18) | H106—C106—C101 | 121.26 (17) |
| C15—C14—C13 | 122.19 (18) | H106—C106—C105 | 121.26 (16) |
| H··· | ||||
| C12—H12···O2ii | 0.95 (1) | 2.45 (1) | 3.355 (3) | 159 (1) |
| C104—H104···O102ii | 0.95 (1) | 2.58 (1) | 3.272 (4) | 130 (1) |