| Literature DB >> 29416889 |
Tuncer Hökelek1, Vijdan Yavuz2, Hakan Dal3, Hacali Necefoğlu2,4.
Abstract
In the crystal of the title complex, [Cu(Entities:
Keywords: copper(II); crystal structure; transition metal complexes of benzoic acid and nicotinamide derivatives
Year: 2018 PMID: 29416889 PMCID: PMC5778483 DOI: 10.1107/S2056989017017765
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title complex with the atom-numbering scheme. Unlabelled atoms are related to labelled ones by the symmetry operation 1 − x, y, − z. Displacement ellipsoids are drawn at the 50% probability level.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H21⋯O5i | 0.78 (5) | 2.23 (5) | 3.009 (7) | 176 (5) |
| N3—H31⋯O1ii | 0.88 (7) | 2.33 (7) | 3.165 (6) | 159 (6) |
| N3—H32⋯O4iii | 0.93 (6) | 2.54 (6) | 3.452 (6) | 165 (6) |
| O6—H61⋯O1iv | 0.83 (5) | 1.79 (5) | 2.603 (4) | 167 (4) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .
Figure 2Part of the crystal structure, viewed down the b axis. O—HW⋯OC, N—HNA⋯ONA, N—HSB⋯OC and N—HSB⋯OSB (W = water, C = carboxylate, NA = nicotinamide and SB = 4-sulfamoylbenzoate) hydrogen bonds, enclosing (8) and (18) ring motifs, are shown as dashed lines. H atoms not involved in these interactions have been omitted for clarity.
Figure 3View of the three-dimensional Hirshfeld surface of the title complex plotted over d norm in the range −0.7548 to 1.5398 a.u.
Figure 4View of the three-dimensional Hirshfeld surface of the title complex plotted over electrostatic potential energy in the range −0.1045 to 0.2914 a.u. using the STO-3G basis set at the Hartree–Fock level of theory. N—H⋯O and O—H⋯O hydrogen-bond donors and acceptors are shown as blue and red regions around the atoms corresponding to positive and negative potentials, respectively.
Figure 5The full two-dimensional fingerprint plots for the title complex, showing (a) all interactions, and delineated into (b) H⋯O/O⋯H, (c) H⋯H, (d) H⋯C/C⋯H, (e) H⋯N/N⋯H, (f) O⋯C/C⋯O, (g) O⋯O and (h) N⋯C/C⋯N interactions. The d i and d e values are the closest internal and external distances (in Å) from given points on the Hirshfeld surface contacts.
Figure 6Representations of the Hirshfeld surface with the function d norm plotted onto the surface for (a) H⋯O/O⋯H, (b) H⋯H, (c) H⋯C/C⋯H, (d) H⋯N/N⋯H and (e) O⋯C/C⋯O interactions.
Experimental details
| Crystal data | |
| Chemical formula | [Cu(C7H6NO4S)2(C6H6N2O)2(H2O)] |
|
| 726.20 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 296 |
|
| 24.2353 (4), 5.6080 (2), 24.9702 (4) |
| β (°) | 118.027 (11) |
|
| 2995.7 (3) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 0.94 |
| Crystal size (mm) | 0.22 × 0.17 × 0.15 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.812, 0.853 |
| No. of measured, independent and observed [ | 26534, 3069, 2535 |
|
| 0.049 |
| (sin θ/λ)max (Å−1) | 0.627 |
| Refinement | |
|
| 0.048, 0.109, 1.10 |
| No. of reflections | 3069 |
| No. of parameters | 227 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.50, −0.58 |
Computer programs: APEX2 and SAINT (Bruker, 2012 ▸), SHELXS97 and SHELXL97 (Sheldrick, 2008 ▸), ORTEP-3 for Windows and WinGX (Farrugia, 2012 ▸) and PLATON (Spek, 2015 ▸).
| [Cu(C7H6NO4S)2(C6H6N2O)2(H2O)] | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 9671 reflections |
| θ = 3.2–26.5° | |
| µ = 0.94 mm−1 | |
| β = 118.027 (11)° | Block, blue |
| 0.22 × 0.17 × 0.15 mm | |
| Bruker APEXII CCD diffractometer | 3069 independent reflections |
| Radiation source: fine-focus sealed tube | 2535 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 26.5°, θmin = 3.2° |
| Absorption correction: multi-scan (SADABS; Bruker, 2012) | |
| 26534 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3069 reflections | (Δ/σ)max < 0.001 |
| 227 parameters | Δρmax = 0.50 e Å−3 |
| 0 restraints | Δρmin = −0.58 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Cu1 | 0.5000 | 0.37776 (10) | 0.7500 | 0.02603 (16) | |
| S1 | 0.24180 (5) | 0.3629 (2) | 0.89016 (5) | 0.0522 (3) | |
| O1 | 0.40911 (14) | −0.0206 (5) | 0.75744 (16) | 0.0598 (9) | |
| O2 | 0.41703 (10) | 0.3706 (4) | 0.74704 (10) | 0.0324 (5) | |
| O3 | 0.28139 (15) | 0.2819 (9) | 0.95048 (13) | 0.0852 (13) | |
| O4 | 0.22142 (16) | 0.6045 (7) | 0.87921 (18) | 0.0791 (11) | |
| O5 | 0.52585 (16) | 0.8045 (7) | 0.56765 (14) | 0.0885 (13) | |
| O6 | 0.5000 | 0.7606 (7) | 0.7500 | 0.0580 (13) | |
| H61 | 0.475 (2) | 0.848 (8) | 0.755 (2) | 0.066 (15)* | |
| N1 | 0.46156 (12) | 0.3576 (5) | 0.65848 (12) | 0.0310 (6) | |
| N2 | 0.4387 (3) | 0.7680 (9) | 0.48231 (18) | 0.0793 (16) | |
| H21 | 0.449 (2) | 0.875 (10) | 0.469 (2) | 0.073 (17)* | |
| H22 | 0.402 (3) | 0.725 (14) | 0.465 (3) | 0.14 (3)* | |
| N3 | 0.18052 (17) | 0.1999 (9) | 0.86238 (19) | 0.0613 (11) | |
| H31 | 0.153 (3) | 0.239 (11) | 0.825 (3) | 0.092* | |
| H32 | 0.191 (3) | 0.041 (11) | 0.874 (3) | 0.092* | |
| C1 | 0.39732 (15) | 0.1892 (6) | 0.76359 (16) | 0.0330 (7) | |
| C2 | 0.35674 (14) | 0.2360 (6) | 0.79293 (14) | 0.0268 (6) | |
| C3 | 0.35135 (16) | 0.0600 (6) | 0.82907 (16) | 0.0349 (8) | |
| H3 | 0.3721 | −0.0843 | 0.8340 | 0.042* | |
| C4 | 0.31532 (16) | 0.0973 (7) | 0.85791 (16) | 0.0391 (8) | |
| H4 | 0.3121 | −0.0201 | 0.8826 | 0.047* | |
| C5 | 0.28411 (15) | 0.3119 (7) | 0.84941 (15) | 0.0348 (8) | |
| C6 | 0.28860 (16) | 0.4881 (7) | 0.81305 (16) | 0.0379 (8) | |
| H6 | 0.2667 | 0.6303 | 0.8071 | 0.045* | |
| C7 | 0.32605 (15) | 0.4514 (6) | 0.78542 (16) | 0.0344 (8) | |
| H7 | 0.3305 | 0.5712 | 0.7620 | 0.041* | |
| C8 | 0.47946 (16) | 0.5133 (6) | 0.62909 (15) | 0.0328 (7) | |
| H8 | 0.5116 | 0.6192 | 0.6518 | 0.039* | |
| C9 | 0.45234 (16) | 0.5243 (7) | 0.56628 (15) | 0.0368 (8) | |
| C10 | 0.40550 (18) | 0.3622 (8) | 0.53334 (17) | 0.0499 (10) | |
| H10 | 0.3865 | 0.3632 | 0.4912 | 0.060* | |
| C11 | 0.38710 (19) | 0.1995 (8) | 0.56309 (18) | 0.0523 (10) | |
| H11 | 0.3558 | 0.0892 | 0.5414 | 0.063* | |
| C12 | 0.41574 (16) | 0.2027 (7) | 0.62562 (16) | 0.0392 (8) | |
| H12 | 0.4029 | 0.0940 | 0.6457 | 0.047* | |
| C13 | 0.47507 (18) | 0.7119 (7) | 0.53885 (16) | 0.0433 (9) |
| Cu1 | 0.0283 (3) | 0.0251 (3) | 0.0346 (3) | 0.000 | 0.0230 (2) | 0.000 |
| S1 | 0.0401 (5) | 0.0787 (8) | 0.0529 (6) | −0.0098 (5) | 0.0344 (5) | −0.0187 (6) |
| O1 | 0.0730 (19) | 0.0313 (15) | 0.112 (3) | 0.0088 (14) | 0.074 (2) | −0.0004 (16) |
| O2 | 0.0299 (11) | 0.0354 (13) | 0.0409 (12) | −0.0012 (10) | 0.0242 (10) | 0.0018 (11) |
| O3 | 0.061 (2) | 0.159 (4) | 0.0415 (16) | −0.010 (2) | 0.0294 (15) | −0.012 (2) |
| O4 | 0.079 (2) | 0.076 (2) | 0.118 (3) | −0.0090 (19) | 0.076 (2) | −0.032 (2) |
| O5 | 0.077 (2) | 0.113 (3) | 0.0510 (18) | −0.054 (2) | 0.0096 (17) | 0.0285 (19) |
| O6 | 0.062 (3) | 0.0222 (19) | 0.125 (4) | 0.000 | 0.073 (3) | 0.000 |
| N1 | 0.0304 (13) | 0.0338 (15) | 0.0363 (14) | −0.0026 (12) | 0.0218 (12) | 0.0023 (12) |
| N2 | 0.088 (3) | 0.082 (3) | 0.041 (2) | −0.037 (3) | 0.007 (2) | 0.024 (2) |
| N3 | 0.042 (2) | 0.086 (3) | 0.070 (2) | −0.011 (2) | 0.0388 (19) | −0.007 (2) |
| C1 | 0.0293 (16) | 0.0304 (18) | 0.0480 (19) | −0.0003 (14) | 0.0253 (15) | 0.0002 (15) |
| C2 | 0.0242 (14) | 0.0255 (16) | 0.0349 (16) | −0.0009 (13) | 0.0173 (13) | −0.0004 (13) |
| C3 | 0.0351 (17) | 0.0266 (17) | 0.048 (2) | 0.0040 (14) | 0.0236 (16) | 0.0042 (15) |
| C4 | 0.0406 (19) | 0.042 (2) | 0.0438 (19) | −0.0010 (16) | 0.0271 (17) | 0.0084 (17) |
| C5 | 0.0261 (16) | 0.048 (2) | 0.0380 (18) | −0.0042 (15) | 0.0215 (15) | −0.0063 (16) |
| C6 | 0.0343 (17) | 0.0341 (19) | 0.053 (2) | 0.0072 (15) | 0.0268 (17) | −0.0018 (17) |
| C7 | 0.0366 (18) | 0.0305 (17) | 0.0442 (19) | 0.0062 (14) | 0.0257 (16) | 0.0064 (15) |
| C8 | 0.0365 (17) | 0.0331 (18) | 0.0324 (17) | −0.0041 (15) | 0.0191 (14) | 0.0028 (14) |
| C9 | 0.0379 (18) | 0.0387 (19) | 0.0351 (18) | −0.0036 (16) | 0.0183 (15) | 0.0030 (16) |
| C10 | 0.049 (2) | 0.062 (3) | 0.0333 (18) | −0.017 (2) | 0.0154 (17) | −0.0004 (19) |
| C11 | 0.052 (2) | 0.058 (3) | 0.044 (2) | −0.023 (2) | 0.0201 (19) | −0.007 (2) |
| C12 | 0.0397 (19) | 0.040 (2) | 0.046 (2) | −0.0100 (16) | 0.0270 (17) | 0.0002 (17) |
| C13 | 0.050 (2) | 0.046 (2) | 0.0348 (19) | −0.0064 (18) | 0.0214 (17) | 0.0045 (17) |
| Cu1—O2 | 1.978 (2) | C1—C2 | 1.500 (4) |
| Cu1—O2i | 1.978 (2) | C2—C7 | 1.384 (4) |
| Cu1—N1 | 2.025 (3) | C2—C3 | 1.384 (5) |
| Cu1—N1i | 2.025 (3) | C3—C4 | 1.384 (5) |
| Cu1—O6 | 2.147 (4) | C3—H3 | 0.9300 |
| S1—O4 | 1.424 (4) | C4—C5 | 1.384 (5) |
| S1—O3 | 1.428 (3) | C4—H4 | 0.9300 |
| S1—N3 | 1.598 (4) | C5—C6 | 1.380 (5) |
| S1—C5 | 1.775 (3) | C6—C7 | 1.389 (5) |
| O1—C1 | 1.237 (4) | C6—H6 | 0.9300 |
| O2—C1 | 1.273 (4) | C7—H7 | 0.9300 |
| O5—C13 | 1.212 (5) | C8—C9 | 1.388 (5) |
| O6—H61 | 0.83 (4) | C8—H8 | 0.9300 |
| N1—C8 | 1.337 (4) | C9—C10 | 1.383 (5) |
| N1—C12 | 1.344 (4) | C9—C13 | 1.495 (5) |
| N2—C13 | 1.303 (5) | C10—C11 | 1.377 (5) |
| N2—H21 | 0.78 (6) | C10—H10 | 0.9300 |
| N2—H22 | 0.82 (7) | C11—C12 | 1.379 (5) |
| N3—H31 | 0.88 (5) | C11—H11 | 0.9300 |
| N3—H32 | 0.93 (6) | C12—H12 | 0.9300 |
| O2—Cu1—O2i | 177.67 (14) | C4—C3—C2 | 120.5 (3) |
| O2—Cu1—N1 | 92.08 (10) | C4—C3—H3 | 119.8 |
| O2i—Cu1—N1 | 87.79 (10) | C2—C3—H3 | 119.8 |
| O2—Cu1—N1i | 87.79 (10) | C5—C4—C3 | 119.0 (3) |
| O2i—Cu1—N1i | 92.08 (10) | C5—C4—H4 | 120.5 |
| N1—Cu1—N1i | 173.61 (16) | C3—C4—H4 | 120.5 |
| O2—Cu1—O6 | 91.16 (7) | C6—C5—C4 | 121.1 (3) |
| O2i—Cu1—O6 | 91.16 (7) | C6—C5—S1 | 120.5 (3) |
| N1—Cu1—O6 | 93.20 (8) | C4—C5—S1 | 118.3 (3) |
| N1i—Cu1—O6 | 93.20 (8) | C5—C6—C7 | 119.5 (3) |
| O4—S1—O3 | 120.4 (3) | C5—C6—H6 | 120.3 |
| O4—S1—N3 | 107.1 (2) | C7—C6—H6 | 120.3 |
| O3—S1—N3 | 107.6 (2) | C2—C7—C6 | 119.8 (3) |
| O4—S1—C5 | 106.55 (19) | C2—C7—H7 | 120.1 |
| O3—S1—C5 | 105.69 (18) | C6—C7—H7 | 120.1 |
| N3—S1—C5 | 109.17 (19) | N1—C8—C9 | 123.1 (3) |
| C1—O2—Cu1 | 122.3 (2) | N1—C8—H8 | 118.5 |
| Cu1—O6—H61 | 126 (3) | C9—C8—H8 | 118.5 |
| C8—N1—C12 | 118.4 (3) | C10—C9—C8 | 117.6 (3) |
| C8—N1—Cu1 | 119.1 (2) | C10—C9—C13 | 124.5 (3) |
| C12—N1—Cu1 | 122.3 (2) | C8—C9—C13 | 117.9 (3) |
| C13—N2—H21 | 117 (4) | C11—C10—C9 | 119.9 (3) |
| C13—N2—H22 | 122 (5) | C11—C10—H10 | 120.1 |
| H21—N2—H22 | 118 (6) | C9—C10—H10 | 120.1 |
| S1—N3—H31 | 113 (4) | C10—C11—C12 | 119.0 (4) |
| S1—N3—H32 | 110 (4) | C10—C11—H11 | 120.5 |
| H31—N3—H32 | 122 (6) | C12—C11—H11 | 120.5 |
| O1—C1—O2 | 125.2 (3) | N1—C12—C11 | 122.1 (3) |
| O1—C1—C2 | 118.0 (3) | N1—C12—H12 | 118.9 |
| O2—C1—C2 | 116.8 (3) | C11—C12—H12 | 118.9 |
| C7—C2—C3 | 120.1 (3) | O5—C13—N2 | 121.3 (4) |
| C7—C2—C1 | 121.4 (3) | O5—C13—C9 | 121.3 (3) |
| C3—C2—C1 | 118.6 (3) | N2—C13—C9 | 117.4 (4) |
| N1—Cu1—O2—C1 | 107.8 (3) | O4—S1—C5—C4 | 172.7 (3) |
| N1i—Cu1—O2—C1 | −65.8 (3) | O3—S1—C5—C4 | 43.5 (4) |
| O6—Cu1—O2—C1 | −158.9 (2) | N3—S1—C5—C4 | −72.0 (3) |
| O2—Cu1—N1—C8 | 130.0 (3) | C4—C5—C6—C7 | −1.3 (5) |
| O2i—Cu1—N1—C8 | −52.3 (3) | S1—C5—C6—C7 | 174.9 (3) |
| O6—Cu1—N1—C8 | 38.8 (2) | C3—C2—C7—C6 | −1.6 (5) |
| O2—Cu1—N1—C12 | −45.7 (3) | C1—C2—C7—C6 | 179.7 (3) |
| O2i—Cu1—N1—C12 | 132.0 (3) | C5—C6—C7—C2 | 2.2 (5) |
| O6—Cu1—N1—C12 | −137.0 (3) | C12—N1—C8—C9 | 0.9 (5) |
| Cu1—O2—C1—O1 | −33.8 (5) | Cu1—N1—C8—C9 | −175.0 (3) |
| Cu1—O2—C1—C2 | 146.0 (2) | N1—C8—C9—C10 | −1.3 (6) |
| O1—C1—C2—C7 | −160.2 (4) | N1—C8—C9—C13 | 178.0 (3) |
| O2—C1—C2—C7 | 19.9 (5) | C8—C9—C10—C11 | 0.6 (6) |
| O1—C1—C2—C3 | 21.1 (5) | C13—C9—C10—C11 | −178.6 (4) |
| O2—C1—C2—C3 | −158.8 (3) | C9—C10—C11—C12 | 0.4 (7) |
| C7—C2—C3—C4 | 0.1 (5) | C8—N1—C12—C11 | 0.2 (5) |
| C1—C2—C3—C4 | 178.8 (3) | Cu1—N1—C12—C11 | 176.0 (3) |
| C2—C3—C4—C5 | 0.8 (5) | C10—C11—C12—N1 | −0.8 (6) |
| C3—C4—C5—C6 | −0.2 (5) | C10—C9—C13—O5 | −159.7 (5) |
| C3—C4—C5—S1 | −176.5 (3) | C8—C9—C13—O5 | 21.1 (6) |
| O4—S1—C5—C6 | −3.5 (4) | C10—C9—C13—N2 | 18.7 (7) |
| O3—S1—C5—C6 | −132.7 (3) | C8—C9—C13—N2 | −160.4 (4) |
| N3—S1—C5—C6 | 111.8 (3) |
| H··· | ||||
| N2—H21···O5ii | 0.78 (5) | 2.23 (5) | 3.009 (7) | 176 (5) |
| N3—H31···O1iii | 0.88 (7) | 2.33 (7) | 3.165 (6) | 159 (6) |
| N3—H32···O4iv | 0.93 (6) | 2.54 (6) | 3.452 (6) | 165 (6) |
| O6—H61···O1v | 0.83 (5) | 1.79 (5) | 2.603 (4) | 167 (4) |