Literature DB >> 29410605

BARKER-CODED NODE-PORE RESISTIVE PULSE SENSING WITH BUILT-IN COINCIDENCE CORRECTION.

Michael Kellman1, Francois Rivest2,3, Alina Pechacek1, Lydia Sohn2, Michael Lustig1.   

Abstract

A resistive pulse sensing device is able to extract quantities such as concentration and size distribution of particles, e.g. cells or microspheres, as they flow through the device's sensor region, i.e. channel, in an electrolyte solution. The dynamic range of detectable particle sizes is limited by the channel dimensions. In addition, signal interference from multiple particles transiting the channel simultaneously, i.e. coincidence event, further hinder the dynamic range. Coincidence data is often considered unusable and is discarded, reducing the throughput and introducing possible biases and errors into the distributions. Here, we propose a two-step solution. We code the channel such that the system response results in a Manchester encoded Barker-Code sequence, allowing us to take advantage of the code's pulse compression properties. We pose the parameter estimation problem as a sparse inverse problem, which enables estimation of particle sizes and velocities while resolving coincidences, and solve it with a successive interference cancellation algorithm. We introduce modifications to the algorithm to account for device fabrication variations and natural stochastic variations in flow. We demonstrate the ability to resolve coincidences and possible increases in the device's dynamic range by screening particles of different size through a Barker encoded device.

Entities:  

Keywords:  Barker Codes; Coincidence Correction; Coulter counter; Inverse Problems; Successive Interference Cancellation

Year:  2017        PMID: 29410605      PMCID: PMC5797712          DOI: 10.1109/ICASSP.2017.7952317

Source DB:  PubMed          Journal:  Proc IEEE Int Conf Acoust Speech Signal Process        ISSN: 1520-6149


  6 in total

1.  Sizes and concentrations of several type C oncornaviruses and bacteriophage T2 by the resistive-pulse technique.

Authors:  R W DeBlois; R K Wesley
Journal:  J Virol       Date:  1977-08       Impact factor: 5.103

Review 2.  Label-free resistive-pulse cytometry.

Authors:  M R Chapman; L L Sohn
Journal:  Methods Cell Biol       Date:  2011       Impact factor: 1.441

3.  On-chip sample preparation for complete blood count from raw blood.

Authors:  John Nguyen; Yuan Wei; Yi Zheng; Chen Wang; Yu Sun
Journal:  Lab Chip       Date:  2015-03-21       Impact factor: 6.799

4.  Microfluidic CODES: a scalable multiplexed electronic sensor for orthogonal detection of particles in microfluidic channels.

Authors:  Ruxiu Liu; Ningquan Wang; Farhan Kamili; A Fatih Sarioglu
Journal:  Lab Chip       Date:  2016-04-21       Impact factor: 6.799

5.  Coincidence detection of heterogeneous cell populations from whole blood with coplanar electrodes in a microfluidic impedance cytometer.

Authors:  U Hassan; R Bashir
Journal:  Lab Chip       Date:  2014-11-21       Impact factor: 6.799

6.  Node-pore sensing: a robust, high-dynamic range method for detecting biological species.

Authors:  Karthik R Balakrishnan; George Anwar; Matthew R Chapman; Trongtuong Nguyen; Anand Kesavaraju; Lydia L Sohn
Journal:  Lab Chip       Date:  2013-04-07       Impact factor: 6.799

  6 in total
  4 in total

Review 1.  Developments in label-free microfluidic methods for single-cell analysis and sorting.

Authors:  Thomas R Carey; Kristen L Cotner; Brian Li; Lydia L Sohn
Journal:  Wiley Interdiscip Rev Nanomed Nanobiotechnol       Date:  2018-04-24

2.  Node-Pore Sensing for Characterizing Cells and Extracellular Vesicles.

Authors:  Thomas Carey; Brian Li; Lydia L Sohn
Journal:  Methods Mol Biol       Date:  2022

3.  Node-Pore Coded Coincidence Correction: Coulter Counters, Code Design, and Sparse Deconvolution.

Authors:  Michael Kellman; Francois Rivest; Alina Pechacek; Lydia Sohn; Michael Lustig
Journal:  IEEE Sens J       Date:  2018-02-14       Impact factor: 4.325

4.  Characterizing cellular mechanical phenotypes with mechano-node-pore sensing.

Authors:  Junghyun Kim; Sewoon Han; Andy Lei; Masaru Miyano; Jessica Bloom; Vasudha Srivastava; Martha M Stampfer; Zev J Gartner; Mark A LaBarge; Lydia L Sohn
Journal:  Microsyst Nanoeng       Date:  2018-03-12       Impact factor: 7.127

  4 in total

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