Literature DB >> 29401312

Differentially expressed microRNAs in the aqueous humor of patients with exfoliation glaucoma or primary open-angle glaucoma.

Michelle D Drewry1, Pratap Challa2, John G Kuchtey3, Iris Navarro2, Inas Helwa1, Yanzhong Hu4, Hongmei Mu5, W Daniel Stamer2, Rachel W Kuchtey3,6, Yutao Liu1,7,8.   

Abstract

Both exfoliation glaucoma (XFG) and primary open-angle glaucoma (POAG) have been linked to decreased conventional outflow of aqueous humor (AH). To better understand the molecular changes in the AH content under such conditions, we analyzed the miRNA profiles of AH samples from patients with POAG and XFG compared to non-glaucoma controls. Individual AH samples (n = 76) were collected from POAG and XFG patients and age-matched controls during surgical procedure. After RNA extraction, the miRNA profiles were individually determined in 12 POAG, 12 XFG and 11 control samples. We identified 205, 295 and 195 miRNAs in the POAG, XFG and control samples, respectively. Our differential expression analysis identified three miRNAs (miR-125b-5p, miR-302d-3p and miR-451a) significantly different between POAG and controls, five miRNAs (miR-122-5p, miR-3144-3p, miR-320a, miR-320e and miR-630) between XFG and controls and one miRNA (miR-302d-3p) between POAG and XFG. While none of these miRNAs have been previously linked to glaucoma, miR-122-5p may target three glaucoma-associated genes: OPTN, TMCO1 and TGF-ß1. Pathway analysis revealed that these miRNAs are involved in potential glaucoma pathways, including focal adhesion, tight junctions, and TGF-ß signaling. Comparison of the miRNA profile in AH to unrelated human serum (n = 12) exposed potential relationships between these two fluids, although they were not significantly correlated. In summary, we have successfully profiled the miRNA expression without amplification in individual human AH samples and identified several POAG or XFG-associated miRNAs. These miRNAs may play a role in pathways previously implicated in glaucoma and act as biomarkers for disease pathogenesis.

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Year:  2018        PMID: 29401312      PMCID: PMC6048986          DOI: 10.1093/hmg/ddy040

Source DB:  PubMed          Journal:  Hum Mol Genet        ISSN: 0964-6906            Impact factor:   6.150


  88 in total

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3.  Multiplex cytokine analysis reveals elevated concentration of interleukin-8 in glaucomatous aqueous humor.

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4.  Gene expression profile in human trabecular meshwork from patients with primary open-angle glaucoma.

Authors:  Yutao Liu; R Rand Allingham; Xuejun Qin; David Layfield; Andrew E Dellinger; Jason Gibson; Joshua Wheeler; Allison E Ashley-Koch; W Daniel Stamer; Michael A Hauser
Journal:  Invest Ophthalmol Vis Sci       Date:  2013-09-27       Impact factor: 4.799

5.  Genome-wide association study identifies susceptibility loci for open angle glaucoma at TMCO1 and CDKN2B-AS1.

Authors:  Kathryn P Burdon; Stuart Macgregor; Alex W Hewitt; Shiwani Sharma; Glyn Chidlow; Richard A Mills; Patrick Danoy; Robert Casson; Ananth C Viswanathan; Jimmy Z Liu; John Landers; Anjali K Henders; John Wood; Emmanuelle Souzeau; April Crawford; Paul Leo; Jie Jin Wang; Elena Rochtchina; Dale R Nyholt; Nicholas G Martin; Grant W Montgomery; Paul Mitchell; Matthew A Brown; David A Mackey; Jamie E Craig
Journal:  Nat Genet       Date:  2011-05-01       Impact factor: 38.330

6.  A common variant mapping to CACNA1A is associated with susceptibility to exfoliation syndrome.

Authors:  Tin Aung; Mineo Ozaki; Takanori Mizoguchi; R Rand Allingham; Zheng Li; Aravind Haripriya; Satoko Nakano; Steffen Uebe; Jeffrey M Harder; Anita S Y Chan; Mei Chin Lee; Kathryn P Burdon; Yury S Astakhov; Khaled K Abu-Amero; Juan C Zenteno; Yildirim Nilgün; Tomasz Zarnowski; Mohammad Pakravan; Leen Abu Safieh; Liyun Jia; Ya Xing Wang; Susan Williams; Daniela Paoli; Patricio G Schlottmann; Lulin Huang; Kar Seng Sim; Jia Nee Foo; Masakazu Nakano; Yoko Ikeda; Rajesh S Kumar; Morio Ueno; Shin-ichi Manabe; Ken Hayashi; Shigeyasu Kazama; Ryuichi Ideta; Yosai Mori; Kazunori Miyata; Kazuhisa Sugiyama; Tomomi Higashide; Etsuo Chihara; Kenji Inoue; Satoshi Ishiko; Akitoshi Yoshida; Masahide Yanagi; Yoshiaki Kiuchi; Makoto Aihara; Tsutomu Ohashi; Toshiya Sakurai; Takako Sugimoto; Hideki Chuman; Fumihiko Matsuda; Kenji Yamashiro; Norimoto Gotoh; Masahiro Miyake; Sergei Y Astakhov; Essam A Osman; Saleh A Al-Obeidan; Ohoud Owaidhah; Leyla Al-Jasim; Sami Al Shahwan; Rhys A Fogarty; Paul Leo; Yaz Yetkin; Çilingir Oğuz; Mozhgan Rezaei Kanavi; Afsaneh Nederi Beni; Shahin Yazdani; Evgeny L Akopov; Kai-Yee Toh; Gareth R Howell; Andrew C Orr; Yufen Goh; Wee Yang Meah; Su Qin Peh; Ewa Kosior-Jarecka; Urszula Lukasik; Mandy Krumbiegel; Eranga N Vithana; Tien Yin Wong; Yutao Liu; Allison E Ashley Koch; Pratap Challa; Robyn M Rautenbach; David A Mackey; Alex W Hewitt; Paul Mitchell; Jie Jin Wang; Ari Ziskind; Trevor Carmichael; Rangappa Ramakrishnan; Kalpana Narendran; Rangaraj Venkatesh; Saravanan Vijayan; Peiquan Zhao; Xueyi Chen; Dalia Guadarrama-Vallejo; Ching Yu Cheng; Shamira A Perera; Rahat Husain; Su-Ling Ho; Ulrich-Christoph Welge-Luessen; Christian Mardin; Ursula Schloetzer-Schrehardt; Axel M Hillmer; Stefan Herms; Susanne Moebus; Markus M Nöthen; Nicole Weisschuh; Rohit Shetty; Arkasubhra Ghosh; Yik Ying Teo; Matthew A Brown; Ignacio Lischinsky; Jonathan G Crowston; Michael Coote; Bowen Zhao; Jinghong Sang; Nihong Zhang; Qisheng You; Vera Vysochinskaya; Panayiota Founti; Anthoula Chatzikyriakidou; Alexandros Lambropoulos; Eleftherios Anastasopoulos; Anne L Coleman; M Roy Wilson; Douglas J Rhee; Jae Hee Kang; Inna May-Bolchakova; Steffen Heegaard; Kazuhiko Mori; Wallace L M Alward; Jost B Jonas; Liang Xu; Jeffrey M Liebmann; Balram Chowbay; Elke Schaeffeler; Matthias Schwab; Fabian Lerner; Ningli Wang; Zhenglin Yang; Paolo Frezzotti; Shigeru Kinoshita; John H Fingert; Masaru Inatani; Kei Tashiro; André Reis; Deepak P Edward; Louis R Pasquale; Toshiaki Kubota; Janey L Wiggs; Francesca Pasutto; Fotis Topouzis; Michael Dubina; Jamie E Craig; Nagahisa Yoshimura; Periasamy Sundaresan; Simon W M John; Robert Ritch; Michael A Hauser; Chiea-Chuen Khor
Journal:  Nat Genet       Date:  2015-02-23       Impact factor: 38.330

Review 7.  Involvement of the Bcl2 gene family in the signaling and control of retinal ganglion cell death.

Authors:  Robert W Nickells; Sheila J Semaan; Cassandra L Schlamp
Journal:  Prog Brain Res       Date:  2008       Impact factor: 2.453

8.  Impaired cytoprotective mechanisms in eyes with pseudoexfoliation syndrome/glaucoma.

Authors:  Matthias Zenkel; Friedrich E Kruse; Gottfried O H Naumann; Ursula Schlötzer-Schrehardt
Journal:  Invest Ophthalmol Vis Sci       Date:  2007-12       Impact factor: 4.799

9.  Multi-platform analysis of microRNA expression measurements in RNA from fresh frozen and FFPE tissues.

Authors:  Christopher P Kolbert; Rod M Feddersen; Fariborz Rakhshan; Diane E Grill; Gyorgy Simon; Sumit Middha; Jin Sung Jang; Vernadette Simon; Debra A Schultz; Michael Zschunke; Wilma Lingle; Jennifer M Carr; E Aubrey Thompson; Ann L Oberg; Bruce W Eckloff; Eric D Wieben; Peter Li; Ping Yang; Jin Jen
Journal:  PLoS One       Date:  2013-01-31       Impact factor: 3.240

10.  WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013.

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Journal:  Nucleic Acids Res       Date:  2013-05-23       Impact factor: 16.971

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  20 in total

Review 1.  The role of microRNAs in glaucoma.

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Review 2.  Expression profiles and prognostic value of miRNAs in retinoblastoma.

Authors:  Lara Elis Alberici Delsin; Karina Bezerra Salomao; Julia Alejandra Pezuk; Maria Sol Brassesco
Journal:  J Cancer Res Clin Oncol       Date:  2018-10-22       Impact factor: 4.553

3.  Identification of Candidate miRNA Biomarkers for Glaucoma.

Authors:  Allyson G Hindle; Robrecht Thoonen; Jessica V Jasien; Robert M H Grange; Krishna Amin; Jasen Wise; Mineo Ozaki; Robert Ritch; Rajeev Malhotra; Emmanuel S Buys
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4.  Cell senescence altered the miRNA expression profile in porcine angular aqueous plexus cells.

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Journal:  Mol Vis       Date:  2020-02-25       Impact factor: 2.367

Review 5.  Crosstalk between MicroRNA and Oxidative Stress in Primary Open-Angle Glaucoma.

Authors:  Saray Tabak; Sofia Schreiber-Avissar; Elie Beit-Yannai
Journal:  Int J Mol Sci       Date:  2021-02-28       Impact factor: 5.923

6.  MicroRNAs in the aqueous humor of patients with different types of glaucoma.

Authors:  Ewa Kosior-Jarecka; Marcin Czop; Karolina Gasińska; Dominika Wróbel-Dudzińska; Daniel P Zalewski; Anna Bogucka-Kocka; Janusz Kocki; Tomasz Żarnowski
Journal:  Graefes Arch Clin Exp Ophthalmol       Date:  2021-04-30       Impact factor: 3.117

7.  MiR-543 Inhibits the Migration and Epithelial-To-Mesenchymal Transition of TGF-β-Treated Endometrial Stromal Cells via the MAPK and Wnt/β-Catenin Signaling Pathways.

Authors:  Linlin Wang; Dan Liu; Jun Wei; Liwei Yuan; Shiyun Zhao; Yani Huang; Jingwen Ma; Zhijuan Yang
Journal:  Pathol Oncol Res       Date:  2021-04-29       Impact factor: 3.201

8.  Systematic Analysis of Transcriptomic Profile of the Effects of Low Dose Atropine Treatment on Scleral Fibroblasts using Next-Generation Sequencing and Bioinformatics.

Authors:  Yu-Ting Hsiao; Wei-An Chang; Ming-Tse Kuo; Jung Lo; Hsien-Chung Lin; Meng-Chi Yen; Shu-Fang Jian; Yi-Jen Chen; Po-Lin Kuo
Journal:  Int J Med Sci       Date:  2019-11-09       Impact factor: 3.738

9.  Expression of mRNAs, miRNAs, and lncRNAs in Human Trabecular Meshwork Cells Upon Mechanical Stretch.

Authors:  Hannah Youngblood; Jingwen Cai; Michelle D Drewry; Inas Helwa; Eric Hu; Sabrina Liu; Hongfang Yu; Hongmei Mu; Yanzhong Hu; Kristin Perkumas; Inas F Aboobakar; William M Johnson; W Daniel Stamer; Yutao Liu
Journal:  Invest Ophthalmol Vis Sci       Date:  2020-05-11       Impact factor: 4.799

10.  Differential miRNA Expression: Signature for Glaucoma in Pseudoexfoliation.

Authors:  Aparna Rao; Munmun Chakraborty; AkashSingha Roy; Prity Sahay; Amiya Pradhan; Niranjan Raj
Journal:  Clin Ophthalmol       Date:  2020-10-05
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