Literature DB >> 29397519

Impact of graphene-based nanomaterials (GBNMs) on the structural and functional conformations of hepcidin peptide.

Krishna P Singh1,2, Lokesh Baweja3, Olaf Wolkenhauer4,5, Qamar Rahman2, Shailendra K Gupta6,7.   

Abstract

Graphene-based nanomaterials (GBNMs) are widely used in various industrial and biomedical applications. GBNMs of different compositions, size and shapes are being introduced without thorough toxicity evaluation due to the unavailability of regulatory guidelines. Computational toxicity prediction methods are used by regulatory bodies to quickly assess health hazards caused by newer materials. Due to increasing demand of GBNMs in various size and functional groups in industrial and consumer based applications, rapid and reliable computational toxicity assessment methods are urgently needed. In the present work, we investigate the impact of graphene and graphene oxide nanomaterials on the structural conformations of small hepcidin peptide and compare the materials for their structural and conformational changes. Our molecular dynamics simulation studies revealed conformational changes in hepcidin due to its interaction with GBMNs, which results in a loss of its functional properties. Our results indicate that hepcidin peptide undergo severe structural deformations when superimposed on the graphene sheet in comparison to graphene oxide sheet. These observations suggest that graphene is more toxic than a graphene oxide nanosheet of similar area. Overall, this study indicates that computational methods based on structural deformation, using molecular dynamics (MD) simulations, can be used for the early evaluation of toxicity potential of novel nanomaterials.

Entities:  

Keywords:  Graphene; Graphene oxide; Hepcidin; Molecular dynamics simulations; Nanotoxicology

Mesh:

Substances:

Year:  2018        PMID: 29397519     DOI: 10.1007/s10822-018-0103-4

Source DB:  PubMed          Journal:  J Comput Aided Mol Des        ISSN: 0920-654X            Impact factor:   3.686


  24 in total

1.  A biomolecular force field based on the free enthalpy of hydration and solvation: the GROMOS force-field parameter sets 53A5 and 53A6.

Authors:  Chris Oostenbrink; Alessandra Villa; Alan E Mark; Wilfred F van Gunsteren
Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

Review 2.  Molecular interaction of proteins and peptides with nanoparticles.

Authors:  Anton A Shemetov; Igor Nabiev; Alyona Sukhanova
Journal:  ACS Nano       Date:  2012-05-31       Impact factor: 15.881

3.  Hepcidin--the iron regulatory hormone.

Authors:  Enrico Rossi
Journal:  Clin Biochem Rev       Date:  2005-08

4.  Canonical sampling through velocity rescaling.

Authors:  Giovanni Bussi; Davide Donadio; Michele Parrinello
Journal:  J Chem Phys       Date:  2007-01-07       Impact factor: 3.488

5.  Essential dynamics of the cellular retinol-binding protein--evidence for ligand-induced conformational changes.

Authors:  D M van Aalten; J B Findlay; A Amadei; H J Berendsen
Journal:  Protein Eng       Date:  1995-11

6.  Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features.

Authors:  W Kabsch; C Sander
Journal:  Biopolymers       Date:  1983-12       Impact factor: 2.505

7.  Essential dynamics of proteins.

Authors:  A Amadei; A B Linssen; H J Berendsen
Journal:  Proteins       Date:  1993-12

8.  Essential dynamics of DNA containing a cis.syn cyclobutane thymine dimer lesion.

Authors:  H Yamaguchi; D M van Aalten; M Pinak; A Furukawa; R Osman
Journal:  Nucleic Acids Res       Date:  1998-04-15       Impact factor: 16.971

Review 9.  The role of hepcidin in iron metabolism.

Authors:  Elizabeta Nemeth; Tomas Ganz
Journal:  Acta Haematol       Date:  2009-11-10       Impact factor: 2.195

10.  Exploring the influence of carbon nanoparticles on the formation of β-sheet-rich oligomers of IAPP₂₂₋₂₈ peptide by molecular dynamics simulation.

Authors:  Jingjing Guo; Jiazhong Li; Yan Zhang; Xiaojie Jin; Huanxiang Liu; Xiaojun Yao
Journal:  PLoS One       Date:  2013-06-05       Impact factor: 3.240

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  2 in total

Review 1.  Toxicology data of graphene-family nanomaterials: an update.

Authors:  Feng Xiaoli; Chen Qiyue; Guo Weihong; Zhang Yaqing; Hu Chen; Wu Junrong; Shao Longquan
Journal:  Arch Toxicol       Date:  2020-04-02       Impact factor: 5.153

Review 2.  Do Carbon Nanotubes and Asbestos Fibers Exhibit Common Toxicity Mechanisms?

Authors:  Suchi Smita Gupta; Krishna P Singh; Shailendra Gupta; Maria Dusinska; Qamar Rahman
Journal:  Nanomaterials (Basel)       Date:  2022-05-17       Impact factor: 5.719

  2 in total

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