Literature DB >> 29395046

Chromatin Configuration Affects the Dynamics and Distribution of a Transiently Interacting Protein.

Assaf Amitai1.   

Abstract

Mesh：

Substances：

Year:  2018        PMID： 29395046      PMCID： PMC5984998          DOI： 10.1016/j.bpj.2017.12.037

Source DB:  PubMed          Journal:  Biophys J        ISSN： 0006-3495            Impact factor:   4.033


× No keyword cloud information.
  31 in total

Review 1.  Protein dynamics: implications for nuclear architecture and gene expression.

Authors:  T Misteli
Journal:  Science       Date:  2001-02-02       Impact factor: 47.728

Review 2.  Chromatin higher-order structure and dynamics.

Authors:  Christopher L Woodcock; Rajarshi P Ghosh
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-04-07       Impact factor: 10.005

3.  Dynamics of CRISPR-Cas9 genome interrogation in living cells.

Authors:  Spencer C Knight; Liangqi Xie; Wulan Deng; Benjamin Guglielmi; Lea B Witkowsky; Lana Bosanac; Elisa T Zhang; Mohamed El Beheiry; Jean-Baptiste Masson; Maxime Dahan; Zhe Liu; Jennifer A Doudna; Robert Tjian
Journal:  Science       Date:  2015-11-13       Impact factor: 47.728

4.  How proteins search for their specific sites on DNA: the role of DNA conformation.

Authors:  Tao Hu; A Yu Grosberg; B I Shklovskii
Journal:  Biophys J       Date:  2006-02-03       Impact factor: 4.033

5.  Transcription factor search for a DNA promoter in a three-state model.

Authors:  Jürgen Reingruber; David Holcman
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2011-08-08

6.  Facilitated diffusion framework for transcription factor search with conformational changes.

Authors:  Jérôme Cartailler; Jürgen Reingruber
Journal:  Phys Biol       Date:  2015-07-22       Impact factor: 2.583

Review 7.  Gene regulation by proteins acting nearby and at a distance.

Authors:  M Ptashne
Journal:  Nature       Date:  1986 Aug 21-27       Impact factor: 49.962

8.  Single-molecule tracking in live cells reveals distinct target-search strategies of transcription factors in the nucleus.

Authors:  Ignacio Izeddin; Vincent Récamier; Lana Bosanac; Ibrahim I Cissé; Lydia Boudarene; Claire Dugast-Darzacq; Florence Proux; Olivier Bénichou; Raphaël Voituriez; Olivier Bensaude; Maxime Dahan; Xavier Darzacq
Journal:  Elife       Date:  2014-06-12       Impact factor: 8.140

9.  Single molecule study of non-specific binding kinetics of LacI in mammalian cells.

Authors:  Laura Caccianini; Davide Normanno; Ignacio Izeddin; Maxime Dahan
Journal:  Faraday Discuss       Date:  2015-09-21       Impact factor: 4.008

10.  In vivo localization of DNA sequences and visualization of large-scale chromatin organization using lac operator/repressor recognition.

Authors:  C C Robinett; A Straight; G Li; C Willhelm; G Sudlow; A Murray; A S Belmont
Journal:  J Cell Biol       Date:  1996-12       Impact factor: 10.539
View more
  12 in total

1.  Force-Dependent Facilitated Dissociation Can Generate Protein-DNA Catch Bonds.

Authors:  Katelyn Dahlke; Jing Zhao; Charles E Sing; Edward J Banigan
Journal:  Biophys J       Date:  2019-08-02       Impact factor: 4.033

2.  Diffusion of DNA-Binding Species in the Nucleus: A Transient Anomalous Subdiffusion Model.

Authors:  Michael J Saxton
Journal:  Biophys J       Date:  2020-04-04       Impact factor: 4.033

3.  Characterizing Properties of Biomolecular Condensates Below the Diffraction Limit In Vivo.

Authors:  Ganesh Pandey; Alisha Budhathoki; Jan-Hendrik Spille
Journal:  Methods Mol Biol       Date:  2023

Review 4.  Advances in Chromatin and Chromosome Research: Perspectives from Multiple Fields.

Authors:  Andrews Akwasi Agbleke; Assaf Amitai; Jason D Buenrostro; Aditi Chakrabarti; Lingluo Chu; Anders S Hansen; Kristen M Koenig; Ajay S Labade; Sirui Liu; Tadasu Nozaki; Sergey Ovchinnikov; Andrew Seeber; Haitham A Shaban; Jan-Hendrik Spille; Andrew D Stephens; Jun-Han Su; Dushan Wadduwage
Journal:  Mol Cell       Date:  2020-08-07       Impact factor: 17.970

5.  Evidence for DNA-mediated nuclear compartmentalization distinct from phase separation.

Authors:  David Trombley McSwiggen; Anders S Hansen; Sheila S Teves; Hervé Marie-Nelly; Yvonne Hao; Alec Basil Heckert; Kayla K Umemoto; Claire Dugast-Darzacq; Robert Tjian; Xavier Darzacq
Journal:  Elife       Date:  2019-05-07       Impact factor: 8.140

6.  An intrinsically disordered region-mediated confinement state contributes to the dynamics and function of transcription factors.

Authors:  David A Garcia; Thomas A Johnson; Diego M Presman; Gregory Fettweis; Kaustubh Wagh; Lorenzo Rinaldi; Diana A Stavreva; Ville Paakinaho; Rikke A M Jensen; Susanne Mandrup; Arpita Upadhyaya; Gordon L Hager
Journal:  Mol Cell       Date:  2021-02-08       Impact factor: 19.328

Review 7.  CTCF as a boundary factor for cohesin-mediated loop extrusion: evidence for a multi-step mechanism.

Authors:  Anders S Hansen
Journal:  Nucleus       Date:  2020-12       Impact factor: 4.197

8.  Guided nuclear exploration increases CTCF target search efficiency.

Authors:  Anders S Hansen; Assaf Amitai; Claudia Cattoglio; Robert Tjian; Xavier Darzacq
Journal:  Nat Chem Biol       Date:  2019-12-02       Impact factor: 15.040

Review 9.  Lost in the Crowd: How Does Human 8-Oxoguanine DNA Glycosylase 1 (OGG1) Find 8-Oxoguanine in the Genome?

Authors:  Ostiane D'Augustin; Sébastien Huet; Anna Campalans; Juan Pablo Radicella
Journal:  Int J Mol Sci       Date:  2020-11-07       Impact factor: 5.923

Review 10.  Navigating the crowd: visualizing coordination between genome dynamics, structure, and transcription.

Authors:  Haitham A Shaban; Roman Barth; Kerstin Bystricky
Journal:  Genome Biol       Date:  2020-11-17       Impact factor: 13.583
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.