Literature DB >> 29386746

Tomographic phase microscopy: principles and applications in bioimaging [Invited].

Di Jin1,2, Renjie Zhou2, Zahid Yaqoob2, Peter T C So1,2,3.   

Abstract

Tomographic phase microscopy (TPM) is an emerging optical microscopic technique for bioimaging. TPM uses digital holographic measurements of complex scattered fields to reconstruct three-dimensional refractive index (RI) maps of cells with diffraction-limited resolution by solving inverse scattering problems. In this paper, we review the developments of TPM from the fundamental physics to its applications in bioimaging. We first provide a comprehensive description of the tomographic reconstruction physical models used in TPM. The RI map reconstruction algorithms and various regularization methods are discussed. Selected TPM applications for cellular imaging, particularly in hematology, are reviewed. Finally, we examine the limitations of current TPM systems, propose future solutions, and envision promising directions in biomedical research.

Entities:  

Year:  2017        PMID: 29386746      PMCID: PMC5788179          DOI: 10.1364/josab.34.000b64

Source DB:  PubMed          Journal:  J Opt Soc Am B        ISSN: 0740-3224            Impact factor:   2.106


  99 in total

Review 1.  How cells coordinate growth and division.

Authors:  Paul Jorgensen; Mike Tyers
Journal:  Curr Biol       Date:  2004-12-14       Impact factor: 10.834

2.  Simultaneous amplitude-contrast and quantitative phase-contrast microscopy by numerical reconstruction of Fresnel off-axis holograms.

Authors:  E Cuche; P Marquet; C Depeursinge
Journal:  Appl Opt       Date:  1999-12-01       Impact factor: 1.980

3.  Tomographic phase microscopy.

Authors:  Wonshik Choi; Christopher Fang-Yen; Kamran Badizadegan; Seungeun Oh; Niyom Lue; Ramachandra R Dasari; Michael S Feld
Journal:  Nat Methods       Date:  2007-08-12       Impact factor: 28.547

4.  Polar gradients of the DYRK-family kinase Pom1 couple cell length with the cell cycle.

Authors:  Sophie G Martin; Martine Berthelot-Grosjean
Journal:  Nature       Date:  2009-05-27       Impact factor: 49.962

5.  Synthetic Fourier transform light scattering.

Authors:  Kyeoreh Lee; Hyeon-Don Kim; Kyoohyun Kim; Youngchan Kim; Timothy R Hillman; Bumki Min; Yongkeun Park
Journal:  Opt Express       Date:  2013-09-23       Impact factor: 3.894

6.  Tomographic phase microscopy with 180° rotation of live cells in suspension by holographic optical tweezers.

Authors:  Mor Habaza; Barak Gilboa; Yael Roichman; Natan T Shaked
Journal:  Opt Lett       Date:  2015-04-15       Impact factor: 3.776

7.  Plane-wave decomposition of spatially random fields.

Authors:  Tan H Nguyen; Hassaan Majeed; Gabriel Popescu
Journal:  Opt Lett       Date:  2015-04-01       Impact factor: 3.776

8.  Assessing light scattering of intracellular organelles in single intact living cells.

Authors:  Maxim Kalashnikov; Wonshik Choi; Chung-Chieh Yu; Yongjin Sung; Ramachandra R Dasari; Kamran Badizadegan; Michael S Feld
Journal:  Opt Express       Date:  2009-10-26       Impact factor: 3.894

9.  A computer simulation study of diffraction tomography.

Authors:  A J Devaney
Journal:  IEEE Trans Biomed Eng       Date:  1983-07       Impact factor: 4.538

10.  Cajal bodies, nucleoli, and speckles in the Xenopus oocyte nucleus have a low-density, sponge-like structure.

Authors:  Korie E Handwerger; Jason A Cordero; Joseph G Gall
Journal:  Mol Biol Cell       Date:  2004-10-27       Impact factor: 4.138

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  13 in total

1.  Dynamic spatial filtering using a digital micromirror device for high-speed optical diffraction tomography.

Authors:  Di Jin; Renjie Zhou; Zahid Yaqoob; Peter T C So
Journal:  Opt Express       Date:  2018-01-08       Impact factor: 3.894

2.  Optical diffraction tomography with finite object support for the minimization of missing cone artifacts.

Authors:  Wojciech Krauze
Journal:  Biomed Opt Express       Date:  2020-03-11       Impact factor: 3.732

3.  High-throughput, volumetric quantitative phase imaging with multiplexed intensity diffraction tomography.

Authors:  Alex Matlock; Lei Tian
Journal:  Biomed Opt Express       Date:  2019-11-22       Impact factor: 3.732

4.  Inverse scattering for reflection intensity phase microscopy.

Authors:  Alex Matlock; Anne Sentenac; Patrick C Chaumet; Ji Yi; Lei Tian
Journal:  Biomed Opt Express       Date:  2020-01-14       Impact factor: 3.562

5.  Reconstruction of bovine spermatozoa substances distribution and morphological differences between Holstein and Korean native cattle using three-dimensional refractive index tomography.

Authors:  Hao Jiang; Jeong-Woo Kwon; Sumin Lee; Yu-Jin Jo; Suk Namgoong; Xue-Rui Yao; Bao Yuan; Jia-Bao Zhang; Yong-Keun Park; Nam-Hyung Kim
Journal:  Sci Rep       Date:  2019-06-19       Impact factor: 4.379

6.  High-fidelity optical diffraction tomography of multiple scattering samples.

Authors:  Joowon Lim; Ahmed B Ayoub; Elizabeth E Antoine; Demetri Psaltis
Journal:  Light Sci Appl       Date:  2019-09-11       Impact factor: 17.782

7.  Phase imaging with computational specificity (PICS) for measuring dry mass changes in sub-cellular compartments.

Authors:  Mikhail E Kandel; Yuchen R He; Young Jae Lee; Taylor Hsuan-Yu Chen; Kathryn Michele Sullivan; Onur Aydin; M Taher A Saif; Hyunjoon Kong; Nahil Sobh; Gabriel Popescu
Journal:  Nat Commun       Date:  2020-12-07       Impact factor: 14.919

8.  Label-free screening of brain tissue myelin content using phase imaging with computational specificity (PICS).

Authors:  Michael Fanous; Chuqiao Shi; Megan P Caputo; Laurie A Rund; Rodney W Johnson; Tapas Das; Matthew J Kuchan; Nahil Sobh; Gabriel Popescu
Journal:  APL Photonics       Date:  2021-07-12

9.  Digital holography and its multidimensional imaging applications: a review.

Authors:  Tatsuki Tahara; Xiangyu Quan; Reo Otani; Yasuhiro Takaki; Osamu Matoba
Journal:  Microscopy (Oxf)       Date:  2018-04-01       Impact factor: 1.571

Review 10.  Roadmap on Digital Holography-Based Quantitative Phase Imaging.

Authors:  Vinoth Balasubramani; Małgorzata Kujawińska; Cédric Allier; Vijayakumar Anand; Chau-Jern Cheng; Christian Depeursinge; Nathaniel Hai; Saulius Juodkazis; Jeroen Kalkman; Arkadiusz Kuś; Moosung Lee; Pierre J Magistretti; Pierre Marquet; Soon Hock Ng; Joseph Rosen; Yong Keun Park; Michał Ziemczonok
Journal:  J Imaging       Date:  2021-11-26
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