Literature DB >> 29383362

Dithioamide substitutions in proteins: effects on thermostability, peptide binding, and fluorescence quenching in calmodulin.

Christopher R Walters1, John J Ferrie, E James Petersson.   

Abstract

Thioamide substitutions in the backbones of proteins can modulate their structure and thermostability, or serve as spectroscopic probes in fluorescence quenching experiments. Using native chemical ligation, we have produced the first examples of a protein (calmodulin) containing two thioamides. Dithioamide variants were made to explore the effects of combining stabilizing, neutral, and destabilizing single thioamide substitutions. One of the dithioamide calmodulin variants exhibited stabilization greater than any monothioamide variant, although the effect could not easily be anticipated from the results of single substitutions. Each of the calmodulin variants retained the ability to bind a target peptide, and the dithioamide proteins exhibited an increase in fluorescence quenching of tryptophan relative to their single thioamide counterparts. These results show that multiply thioamidated proteins can be synthesized, and that properly placed thioamides can be used to increase protein thermostability or enhance fluorecsence quenching in peptide binding experiments.

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Year:  2018        PMID: 29383362      PMCID: PMC5845795          DOI: 10.1039/c8cc00104a

Source DB:  PubMed          Journal:  Chem Commun (Camb)        ISSN: 1359-7345            Impact factor:   6.222


  24 in total

1.  Compatibility of the thioamide functional group with beta-sheet secondary structure: incorporation of a thioamide linkage into a beta-hairpin peptide.

Authors:  J H Miwa; A K Patel; N Vivatrat; S M Popek; A M Meyer
Journal:  Org Lett       Date:  2001-10-18       Impact factor: 6.005

2.  Crystal structures of apocalmodulin and an apocalmodulin/SK potassium channel gating domain complex.

Authors:  Maria A Schumacher; Matthew Crum; Marshall C Miller
Journal:  Structure       Date:  2004-05       Impact factor: 5.006

3.  Thiopeptide Synthesis. alpha-Amino Thionoacid Derivatives of Nitrobenzotriazole as Thioacylating Agents.

Authors:  M. Ashraf Shalaby; Christopher W. Grote; Henry Rapoport
Journal:  J Org Chem       Date:  1996-12-13       Impact factor: 4.354

4.  Conformational stability of helical peptides containing a thioamide linkage.

Authors:  Julia H Miwa; Letha Pallivathucal; Shyla Gowda; Katherine E Lee
Journal:  Org Lett       Date:  2002-12-26       Impact factor: 6.005

5.  Efficient Site-Specific Incorporation of Thioamides into Peptides on a Solid Support.

Authors:  Somnath Mukherjee; Hitesh Verma; Jayanta Chatterjee
Journal:  Org Lett       Date:  2015-06-10       Impact factor: 6.005

Review 6.  Structural diversity of calmodulin binding to its target sites.

Authors:  Henning Tidow; Poul Nissen
Journal:  FEBS J       Date:  2013-05-13       Impact factor: 5.542

7.  Semi-synthesis of thioamide containing proteins.

Authors:  Yanxin J Wang; D Miklos Szantai-Kis; E James Petersson
Journal:  Org Biomol Chem       Date:  2015-05-14       Impact factor: 3.876

8.  Thioamide quenching of intrinsic protein fluorescence.

Authors:  Jacob M Goldberg; Rebecca F Wissner; Alyssa M Klein; E James Petersson
Journal:  Chem Commun (Camb)       Date:  2011-09-12       Impact factor: 6.222

9.  Solution structure of calcium-free calmodulin.

Authors:  H Kuboniwa; N Tjandra; S Grzesiek; H Ren; C B Klee; A Bax
Journal:  Nat Struct Biol       Date:  1995-09

10.  The effects of thioamide backbone substitution on protein stability: a study in α-helical, β-sheet, and polyproline II helical contexts.

Authors:  Christopher R Walters; D Miklos Szantai-Kis; Yitao Zhang; Zachary E Reinert; W Seth Horne; David M Chenoweth; E James Petersson
Journal:  Chem Sci       Date:  2017-02-08       Impact factor: 9.825

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  3 in total

Review 1.  Biosynthesis and Chemical Applications of Thioamides.

Authors:  Nilkamal Mahanta; D Miklos Szantai-Kis; E James Petersson; Douglas A Mitchell
Journal:  ACS Chem Biol       Date:  2019-01-30       Impact factor: 5.100

2.  Hydrogen Bond and Geometry Effects of Thioamide Backbone Modifications.

Authors:  Bryan J Lampkin; Brett VanVeller
Journal:  J Org Chem       Date:  2021-12-01       Impact factor: 4.354

3.  Structural impact of thioamide incorporation into a β-hairpin.

Authors:  Kristen E Fiore; Martijn J Patist; Sam Giannakoulias; Cheng-Hsin Huang; Hitesh Verma; Bhavesh Khatri; Richard P Cheng; Jayanta Chatterjee; E James Petersson
Journal:  RSC Chem Biol       Date:  2022-04-05
  3 in total

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