Literature DB >> 15130477

Crystal structures of apocalmodulin and an apocalmodulin/SK potassium channel gating domain complex.

Maria A Schumacher1, Matthew Crum, Marshall C Miller.   

Abstract

Small conductance Ca2+-activated K+ channels (SK channels) are composed of the pore-forming alpha subunit and calmodulin (CaM). CaM binds to a region of the alpha subunit called the CaM binding domain (CaMBD), located intracellular and immediately C-terminal to the inner helix gate, in either the presence or absence of Ca2+. SK gating occurs when Ca2+ binds the N lobe of CaM thereby transmitting the signal to the attached inner helix gate to open. Here we present crystal structures of apoCaM and apoCaM/SK2 CaMBD complex. Several apoCaM crystal forms with multiple (12) packing environments reveal the same EF hand domain-swapped dimer providing potentially new insight into CaM regulation. The apoCaM/SK2 CaMBD structure, combined with our Ca2+/CaM/CaMBD structure suggests that Ca2+ binding induces folding and dimerization of the CaMBD, which causes large CaMBD-CaM C lobe conformational changes, including a >90 degrees rotation of the region of the CaMBD directly connected to the gate.

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Year:  2004        PMID: 15130477     DOI: 10.1016/j.str.2004.03.017

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  60 in total

1.  Analysis and elimination of a bias in targeted molecular dynamics simulations of conformational transitions: application to calmodulin.

Authors:  Victor Ovchinnikov; Martin Karplus
Journal:  J Phys Chem B       Date:  2012-03-28       Impact factor: 2.991

2.  Crystal structure of the ternary complex of a NaV C-terminal domain, a fibroblast growth factor homologous factor, and calmodulin.

Authors:  Chaojian Wang; Ben C Chung; Haidun Yan; Seok-Yong Lee; Geoffrey S Pitt
Journal:  Structure       Date:  2012-06-14       Impact factor: 5.006

3.  Prediction of volatile anesthetic binding sites in proteins.

Authors:  John H Streiff; Thomas W Allen; Elena Atanasova; Nenad Juranic; Slobodan Macura; Alan R Penheiter; Keith A Jones
Journal:  Biophys J       Date:  2006-07-28       Impact factor: 4.033

4.  Quantitative analysis of the conservation of the tertiary structure of protein segments.

Authors:  Jishou Ruan; Ke Chen; Jack A Tuszynski; Lukasz A Kurgan
Journal:  Protein J       Date:  2006-07       Impact factor: 2.371

5.  Structural dependencies of protein backbone 2JNC' couplings.

Authors:  Nenad Juranić; J J Dannenberg; Gabriel Cornilescu; Pedro Salvador; Elena Atanasova; Hee-Chul Ahn; Slobodan Macura; John L Markley; Franklyn G Prendergast
Journal:  Protein Sci       Date:  2008-02-27       Impact factor: 6.725

6.  An NH2-terminal multi-basic RKR motif is required for the ATP-dependent regulation of hIK1.

Authors:  Heather M Jones; Mark A Bailey; Catherine J Baty; Gordon G Macgregor; Colin A Syme; Kirk L Hamilton; Daniel C Devor
Journal:  Channels (Austin)       Date:  2007-02-12       Impact factor: 2.581

7.  Calcium-independent calmodulin binding and two-metal-ion catalytic mechanism of anthrax edema factor.

Authors:  Yuequan Shen; Natalia L Zhukovskaya; Qing Guo; Jan Florián; Wei-Jen Tang
Journal:  EMBO J       Date:  2005-02-17       Impact factor: 11.598

8.  Further Optimization and Validation of the Classical Drude Polarizable Protein Force Field.

Authors:  Fang-Yu Lin; Jing Huang; Poonam Pandey; Chetan Rupakheti; Jing Li; Benoı T Roux; Alexander D MacKerell
Journal:  J Chem Theory Comput       Date:  2020-04-27       Impact factor: 6.006

9.  Coordination to lanthanide ions distorts binding site conformation in calmodulin.

Authors:  Sean C Edington; Andrea Gonzalez; Thomas R Middendorf; D Brent Halling; Richard W Aldrich; Carlos R Baiz
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-15       Impact factor: 11.205

10.  Calcium-induced folding of a fragment of calmodulin composed of EF-hands 2 and 3.

Authors:  Ted M Lakowski; Gregory M Lee; Mark Okon; Ronald E Reid; Lawrence P McIntosh
Journal:  Protein Sci       Date:  2007-05-01       Impact factor: 6.725

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