Literature DB >> 29382693

Synthetic MicroProteins: Versatile Tools for Posttranslational Regulation of Target Proteins.

Ulla Dolde1, Vandasue Rodrigues1, Daniel Straub1, Kaushal Kumar Bhati1, Sukwon Choi2, Seong Wook Yang2,3, Stephan Wenkel4.   

Abstract

MicroProteins are small, single-domain proteins that regulate multidomain proteins by sequestering them into novel, often nonproductive, complexes. Several microProteins have been identified in plants and animals, most of which negatively regulate transcription factors. MicroProtein candidates that potentially target a wide range of different protein classes were recently identified in a computational approach. Here, we classified all Arabidopsis (Arabidopsis thaliana) microProteins and developed a synthetic microProtein approach to target specific protein classes, such as hydrolases, receptors, and lyases, in a proof-of-concept approach. Our findings reveal that microProteins can be used to influence different physiological processes, which makes them useful tools for posttranslational regulation in plants and potentially also in animals.
© 2018 American Society of Plant Biologists. All Rights Reserved.

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Year:  2018        PMID: 29382693      PMCID: PMC5884610          DOI: 10.1104/pp.17.01743

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


  47 in total

1.  Arabidopsis cryptochrome 1 interacts with SPA1 to suppress COP1 activity in response to blue light.

Authors:  Bin Liu; Zecheng Zuo; Hongtao Liu; Xuanming Liu; Chentao Lin
Journal:  Genes Dev       Date:  2011-04-21       Impact factor: 11.361

2.  MicroRNA genes are transcribed by RNA polymerase II.

Authors:  Yoontae Lee; Minju Kim; Jinju Han; Kyu-Hyun Yeom; Sanghyuk Lee; Sung Hee Baek; V Narry Kim
Journal:  EMBO J       Date:  2004-09-16       Impact factor: 11.598

Review 3.  MicroProteins: small size-big impact.

Authors:  Tenai Eguen; Daniel Straub; Moritz Graeff; Stephan Wenkel
Journal:  Trends Plant Sci       Date:  2015-06-23       Impact factor: 18.313

4.  The interaction between DCL1 and HYL1 is important for efficient and precise processing of pri-miRNA in plant microRNA biogenesis.

Authors:  Yukio Kurihara; Yuasa Takashi; Yuichiro Watanabe
Journal:  RNA       Date:  2006-02       Impact factor: 4.942

5.  The RNA-binding proteins HYL1 and SE promote accurate in vitro processing of pri-miRNA by DCL1.

Authors:  Zhicheng Dong; Meng-Hsuan Han; Nina Fedoroff
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-16       Impact factor: 11.205

Review 6.  ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering.

Authors:  Thomas Gaj; Charles A Gersbach; Carlos F Barbas
Journal:  Trends Biotechnol       Date:  2013-05-09       Impact factor: 19.536

Review 7.  Signaling mechanisms of plant cryptochromes in Arabidopsis thaliana.

Authors:  Bobin Liu; Zhaohe Yang; Adam Gomez; Bin Liu; Chentao Lin; Yoshito Oka
Journal:  J Plant Res       Date:  2016-01-25       Impact factor: 2.629

8.  BRI1/BAK1, a receptor kinase pair mediating brassinosteroid signaling.

Authors:  Kyoung Hee Nam; Jianming Li
Journal:  Cell       Date:  2002-07-26       Impact factor: 41.582

9.  A feedback regulatory module formed by LITTLE ZIPPER and HD-ZIPIII genes.

Authors:  Stephan Wenkel; John Emery; Bi-Huei Hou; Matthew M S Evans; M K Barton
Journal:  Plant Cell       Date:  2007-11-30       Impact factor: 11.277

10.  Molecular insights into miRNA processing by Arabidopsis thaliana SERRATE.

Authors:  Satoru Machida; Hong-Ying Chen; Y Adam Yuan
Journal:  Nucleic Acids Res       Date:  2011-06-17       Impact factor: 16.971

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  6 in total

1.  MicroProteins as the First Step toward a Master Key for Posttranslational Regulation.

Authors:  Raimund Nagel
Journal:  Plant Physiol       Date:  2018-04       Impact factor: 8.340

2.  Structural evolution drives diversification of the large LRR-RLK gene family.

Authors:  Jarrett Man; Joseph P Gallagher; Madelaine Bartlett
Journal:  New Phytol       Date:  2020-02-29       Impact factor: 10.151

Review 3.  Approaches to identify and characterize microProteins and their potential uses in biotechnology.

Authors:  Kaushal Kumar Bhati; Anko Blaakmeer; Esther Botterweg Paredes; Ulla Dolde; Tenai Eguen; Shin-Young Hong; Vandasue Rodrigues; Daniel Straub; Bin Sun; Stephan Wenkel
Journal:  Cell Mol Life Sci       Date:  2018-04-18       Impact factor: 9.261

4.  The microprotein Nrs1 rewires the G1/S transcriptional machinery during nitrogen limitation in budding yeast.

Authors:  Sylvain Tollis; Jaspal Singh; Roger Palou; Yogitha Thattikota; Ghada Ghazal; Jasmin Coulombe-Huntington; Xiaojing Tang; Susan Moore; Deborah Blake; Eric Bonneil; Catherine A Royer; Pierre Thibault; Mike Tyers
Journal:  PLoS Biol       Date:  2022-03-03       Impact factor: 8.029

Review 5.  Stop CRYing! Inhibition of cryptochrome function by small proteins.

Authors:  Valdeko Kruusvee; Arendse Maria Toft; Blanche Aguida; Margaret Ahmad; Stephan Wenkel
Journal:  Biochem Soc Trans       Date:  2022-04-29       Impact factor: 4.919

6.  Global Analysis of Cereal microProteins Suggests Diverse Roles in Crop Development and Environmental Adaptation.

Authors:  Kaushal Kumar Bhati; Valdeko Kruusvee; Daniel Straub; Anil Kumar Nalini Chandran; Ki-Hong Jung; Stephan Wenkel
Journal:  G3 (Bethesda)       Date:  2020-10-05       Impact factor: 3.154

  6 in total

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