Literature DB >> 29380875

The value of cell-free DNA for molecular pathology.

Caitlin M Stewart1,2, Prachi D Kothari1,3, Florent Mouliere4,5, Richard Mair4,5,6, Saira Somnay7, Ryma Benayed2, Ahmet Zehir2, Britta Weigelt2, Sarah-Jane Dawson8,9,10, Maria E Arcila2, Michael F Berger1,2, Dana Wy Tsui1,2.   

Abstract

Over the past decade, advances in molecular biology and genomics techniques have revolutionized the diagnosis and treatment of cancer. The technological advances in tissue profiling have also been applied to the study of cell-free nucleic acids, an area of increasing interest for molecular pathology. Cell-free nucleic acids are released from tumour cells into the surrounding body fluids and can be assayed non-invasively. The repertoire of genomic alterations in circulating tumour DNA (ctDNA) is reflective of both primary tumours and distant metastatic sites, and ctDNA can be sampled multiple times, thereby overcoming the limitations of the analysis of single biopsies. Furthermore, ctDNA can be sampled regularly to monitor response to treatment, to define the evolution of the tumour genome, and to assess the acquisition of resistance and minimal residual disease. Recently, clinical ctDNA assays have been approved for guidance of therapy, which is an exciting first step in translating cell-free nucleic acid research tests into clinical use for oncology. In this review, we discuss the advantages of cell-free nucleic acids as analytes in different body fluids, including blood plasma, urine, and cerebrospinal fluid, and their clinical applications in solid tumours and haematological malignancies. We will also discuss practical considerations for clinical deployment, such as preanalytical factors and regulatory requirements.
Copyright © 2018 Pathological Society of Great Britain and Ireland. Published by John Wiley & Sons, Ltd. Copyright © 2018 Pathological Society of Great Britain and Ireland. Published by John Wiley & Sons, Ltd.

Entities:  

Keywords:  DNA sequencing; PCR; cancer; cell-free nucleic acids; circulating tumour DNA; genomics; liquid biopsy; molecular pathology

Mesh:

Substances:

Year:  2018        PMID: 29380875      PMCID: PMC6656375          DOI: 10.1002/path.5048

Source DB:  PubMed          Journal:  J Pathol        ISSN: 0022-3417            Impact factor:   7.996


  185 in total

1.  Analysis of cell-free Epstein-Barr virus associated RNA in the plasma of patients with nasopharyngeal carcinoma.

Authors:  K W Lo; Y M Lo; S F Leung; Y S Tsang; L Y Chan; P J Johnson; N M Hjelm; J C Lee; D P Huang
Journal:  Clin Chem       Date:  1999-08       Impact factor: 8.327

2.  Early detection of leptomeningeal metastasis by PCR examination of tumor-derived K-ras DNA in cerebrospinal fluid.

Authors:  D W Swinkels; J B de Kok; A Hanselaar; K Lamers; R H Boerman
Journal:  Clin Chem       Date:  2000-01       Impact factor: 8.327

3.  DNA fragments in the blood plasma of cancer patients: quantitations and evidence for their origin from apoptotic and necrotic cells.

Authors:  S Jahr; H Hentze; S Englisch; D Hardt; F O Fackelmayer; R D Hesch; R Knippers
Journal:  Cancer Res       Date:  2001-02-15       Impact factor: 12.701

4.  Pap smears in women with endometrial carcinoma.

Authors:  M Gu; W Shi; R R Barakat; H T Thaler; P E Saigo
Journal:  Acta Cytol       Date:  2001 Jul-Aug       Impact factor: 2.319

5.  Genetic analysis of DNA excreted in urine: a new approach for detecting specific genomic DNA sequences from cells dying in an organism.

Authors:  I Botezatu; O Serdyuk; G Potapova; V Shelepov; R Alechina; Y Molyaka; V Ananév; I Bazin; A Garin; M Narimanov; V Knysh; H Melkonyan; S Umansky; A Lichtenstein
Journal:  Clin Chem       Date:  2000-08       Impact factor: 8.327

6.  Prenatal DNA diagnosis of a single-gene disorder from maternal plasma.

Authors:  H Saito; A Sekizawa; T Morimoto; M Suzuki; T Yanaihara
Journal:  Lancet       Date:  2000-09-30       Impact factor: 79.321

7.  Detection of free-circulating tumor-associated DNA in plasma of colorectal cancer patients and its association with prognosis.

Authors:  Thierry Lecomte; Anne Berger; Franck Zinzindohoué; Stéphanie Micard; Bruno Landi; Hélène Blons; Philippe Beaune; Paul-Henri Cugnenc; Pierre Laurent-Puig
Journal:  Int J Cancer       Date:  2002-08-10       Impact factor: 7.396

8.  Rapid clearance of plasma Epstein-Barr virus DNA after surgical treatment of nasopharyngeal carcinoma.

Authors:  Edward W H To; K C Allen Chan; Sing-Fai Leung; Lisa Y S Chan; Ka-Fai To; Anthony T C Chan; Philip J Johnson; Y M Dennis Lo
Journal:  Clin Cancer Res       Date:  2003-08-15       Impact factor: 12.531

9.  Human urine contains small, 150 to 250 nucleotide-sized, soluble DNA derived from the circulation and may be useful in the detection of colorectal cancer.

Authors:  Ying-Hsiu Su; Mengjun Wang; Dean E Brenner; Alan Ng; Hovsep Melkonyan; Samuil Umansky; Sapna Syngal; Timothy M Block
Journal:  J Mol Diagn       Date:  2004-05       Impact factor: 5.568

10.  Human papillomavirus DNA in plasma of patients with cervical cancer.

Authors:  W Pornthanakasem; K Shotelersuk; W Termrungruanglert; N Voravud; S Niruthisard; A Mutirangura
Journal:  BMC Cancer       Date:  2001-03-05       Impact factor: 4.430

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  23 in total

1.  Multicancer Screening Tests: Anticipating And Addressing Considerations For Payer Coverage And Patient Access.

Authors:  Patricia A Deverka; Michael P Douglas; Kathryn A Phillips
Journal:  Health Aff (Millwood)       Date:  2022-03       Impact factor: 6.301

Review 2.  Circulating tumor cells as Trojan Horse for understanding, preventing, and treating cancer: a critical appraisal.

Authors:  Alexios-Fotios A Mentis; Petros D Grivas; Efthimios Dardiotis; Nicholas A Romas; Athanasios G Papavassiliou
Journal:  Cell Mol Life Sci       Date:  2020-04-24       Impact factor: 9.261

Review 3.  Omics in Seminal Plasma: An Effective Strategy for Predicting Sperm Retrieval Outcome in Non-obstructive Azoospermia.

Authors:  Reza Zarezadeh; Saba Nikanfar; Hajar Oghbaei; Yeganeh Rastgar Rezaei; Davoud Jafari-Gharabaghlou; Yadollah Ahmadi; Mohammad Nouri; Amir Fattahi; Ralf Dittrich
Journal:  Mol Diagn Ther       Date:  2021-04-15       Impact factor: 4.074

Review 4.  Practical considerations for optimising homologous recombination repair mutation testing in patients with metastatic prostate cancer.

Authors:  David Gonzalez; Joaquin Mateo; Albrecht Stenzinger; Federico Rojo; Michelle Shiller; Alexander W Wyatt; Frédérique Penault-Llorca; Leonard G Gomella; Ros Eeles; Anders Bjartell
Journal:  J Pathol Clin Res       Date:  2021-02-25

5.  Plasma cfDNA as a Potential Biomarker to Evaluate the Efficacy of Chemotherapy in Gastric Cancer.

Authors:  Yuejiao Zhong; Qingyu Fan; Zhaofei Zhou; Yajing Wang; Kang He; Jianwei Lu
Journal:  Cancer Manag Res       Date:  2020-05-05       Impact factor: 3.989

6.  A DNA-modified hydrogel for simultaneous purification, concentration and detection of targeted cfDNA in human serum.

Authors:  Xinglu Jiang; Chenggui Zhao; Xiaobo Fan; Wei Xu; Rui Zhang; Hongbo Xu; Guoqiu Wu
Journal:  RSC Adv       Date:  2019-01-25       Impact factor: 4.036

7.  Differential Kinase Activity Across Prostate Tumor Compartments Defines Sensitivity to Target Inhibition.

Authors:  Nezihi Murat Karabacak; Yu Zheng; Taronish D Dubash; Risa Burr; Douglas S Micalizzi; Ben S Wittner; Maoxuan Lin; Devon F Wiley; Valentine Comaills; Erin Emmons; Kira L Niederhoffer; Uyen Ho; Jacob Ukleja; Dante Che; Hannah Stowe; Linda T Nieman; Wilhelm Haas; Shannon L Stott; Michael S Lawrence; David T Ting; David T Miyamoto; Daniel A Haber; Mehmet Toner; Shyamala Maheswaran
Journal:  Cancer Res       Date:  2022-03-15       Impact factor: 13.312

8.  A Multicenter Study to Assess EGFR Mutational Status in Plasma: Focus on an Optimized Workflow for Liquid Biopsy in a Clinical Setting.

Authors:  Laure Sorber; Karen Zwaenepoel; Koen De Winne; Kaat Van Casteren; Elien Augustus; Julie Jacobs; Xiang Hua Zhang; Daniëlla Galdermans; Els De Droogh; Anneke Lefebure; Ann-Marie Morel; Erika Saenen; Frédérique Bustin; Ingel Demedts; Ulrike Himpe; Thierry Pieters; Paul Germonpré; Sofie Derijcke; Koen Deschepper; Jan P Van Meerbeeck; Christian Rolfo; Patrick Pauwels
Journal:  Cancers (Basel)       Date:  2018-08-27       Impact factor: 6.639

9.  Diagnosis of Parapneumonia Pleural Effusion with Serum and Pleural Fluid Cell-Free DNA.

Authors:  Chih-Min Su; Chia-Te Kung; Sheng-Yuan Hsiao; Nai-Wen Tsai; Yun-Ru Lai; Chih-Cheng Huang; Hung-Chen Wang; Wei-Che Lin; Ben-Chung Cheng; Yu-Jih Su; Cheng-Hsien Lu
Journal:  Biomed Res Int       Date:  2019-03-04       Impact factor: 3.411

Review 10.  Clinical relevance of circulating molecules in cancer: focus on gastrointestinal stromal tumors.

Authors:  Gloria Ravegnini; Giulia Sammarini; César Serrano; Margherita Nannini; Maria A Pantaleo; Patrizia Hrelia; Sabrina Angelini
Journal:  Ther Adv Med Oncol       Date:  2019-03-01       Impact factor: 8.168

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