Literature DB >> 29379264

Population Based Image Imputation.

Adrian V Dalca1,2, Katherine L Bouman1, William T Freeman1,3, Natalia S Rost4, Mert R Sabuncu2,5, Polina Golland1.   

Abstract

We present an algorithm for creating high resolution anatomically plausible images consistent with acquired clinical brain MRI scans with large inter-slice spacing. Although large databases of clinical images contain a wealth of information, medical acquisition constraints result in sparse scans that miss much of the anatomy. These characteristics often render computational analysis impractical as standard processing algorithms tend to fail when applied to such images. Highly specialized or application-specific algorithms that explicitly handle sparse slice spacing do not generalize well across problem domains. In contrast, our goal is to enable application of existing algorithms that were originally developed for high resolution research scans to significantly undersampled scans. We introduce a model that captures fine-scale anatomical similarity across subjects in clinical image collections and use it to fill in the missing data in scans with large slice spacing. Our experimental results demonstrate that the proposed method outperforms current upsampling methods and promises to facilitate subsequent analysis not previously possible with scans of this quality.

Entities:  

Mesh:

Year:  2017        PMID: 29379264      PMCID: PMC5786165          DOI: 10.1007/978-3-319-59050-9_52

Source DB:  PubMed          Journal:  Inf Process Med Imaging        ISSN: 1011-2499


  17 in total

1.  A hybrid approach to the skull stripping problem in MRI.

Authors:  F Ségonne; A M Dale; E Busa; M Glessner; D Salat; H K Hahn; B Fischl
Journal:  Neuroimage       Date:  2004-07       Impact factor: 6.556

2.  Patch-based segmentation using expert priors: application to hippocampus and ventricle segmentation.

Authors:  Pierrick Coupé; José V Manjón; Vladimir Fonov; Jens Pruessner; Montserrat Robles; D Louis Collins
Journal:  Neuroimage       Date:  2010-09-17       Impact factor: 6.556

3.  Non-local MRI upsampling.

Authors:  José V Manjón; Pierrick Coupé; Antonio Buades; Vladimir Fonov; D Louis Collins; Montserrat Robles
Journal:  Med Image Anal       Date:  2010-06-04       Impact factor: 8.545

4.  Image denoising via sparse and redundant representations over learned dictionaries.

Authors:  Michael Elad; Michal Aharon
Journal:  IEEE Trans Image Process       Date:  2006-12       Impact factor: 10.856

5.  Quantification and Analysis of Large Multimodal Clinical Image Studies: Application to Stroke.

Authors:  Ramesh Sridharan; Adrian V Dalca; Kaitlin M Fitzpatrick; Lisa Cloonan; Allison Kanakis; Ona Wu; Karen L Furie; Jonathan Rosand; Natalia S Rost; Polina Golland
Journal:  Multimodal Brain Image Anal (2013)       Date:  2013

6.  Super-resolution reconstruction using cross-scale self-similarity in multi-slice MRI.

Authors:  Esben Plenge; Dirk H J Poot; Wiro J Niessen; Erik Meijering
Journal:  Med Image Comput Comput Assist Interv       Date:  2013

7.  A supervised patch-based approach for human brain labeling.

Authors:  Françcois Rousseau; Piotr A Habas; Colin Studholme
Journal:  IEEE Trans Med Imaging       Date:  2011-05-19       Impact factor: 10.048

8.  White matter hyperintensity burden and susceptibility to cerebral ischemia.

Authors:  Natalia S Rost; Kaitlin Fitzpatrick; Alessandro Biffi; Allison Kanakis; William Devan; Christopher D Anderson; Lynelle Cortellini; Karen L Furie; Jonathan Rosand
Journal:  Stroke       Date:  2010-10-14       Impact factor: 7.914

9.  Hierarchical manifold learning for regional image analysis.

Authors:  Kanwal K Bhatia; Anil Rao; Anthony N Price; Robin Wolz; Joseph V Hajnal; Daniel Rueckert
Journal:  IEEE Trans Med Imaging       Date:  2013-10-24       Impact factor: 10.048

10.  The autism brain imaging data exchange: towards a large-scale evaluation of the intrinsic brain architecture in autism.

Authors:  A Di Martino; C-G Yan; Q Li; E Denio; F X Castellanos; K Alaerts; J S Anderson; M Assaf; S Y Bookheimer; M Dapretto; B Deen; S Delmonte; I Dinstein; B Ertl-Wagner; D A Fair; L Gallagher; D P Kennedy; C L Keown; C Keysers; J E Lainhart; C Lord; B Luna; V Menon; N J Minshew; C S Monk; S Mueller; R-A Müller; M B Nebel; J T Nigg; K O'Hearn; K A Pelphrey; S J Peltier; J D Rudie; S Sunaert; M Thioux; J M Tyszka; L Q Uddin; J S Verhoeven; N Wenderoth; J L Wiggins; S H Mostofsky; M P Milham
Journal:  Mol Psychiatry       Date:  2013-06-18       Impact factor: 15.992

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  2 in total

1.  Medical Image Imputation from Image Collections.

Authors:  Adrian V Dalca; Katherine L Bouman; William T Freeman; Natalia S Rost; Mert R Sabuncu; Polina Golland
Journal:  IEEE Trans Med Imaging       Date:  2018-08-22       Impact factor: 10.048

2.  SMORE: A Self-Supervised Anti-Aliasing and Super-Resolution Algorithm for MRI Using Deep Learning.

Authors:  Can Zhao; Blake E Dewey; Dzung L Pham; Peter A Calabresi; Daniel S Reich; Jerry L Prince
Journal:  IEEE Trans Med Imaging       Date:  2021-03-02       Impact factor: 10.048

  2 in total

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