Literature DB >> 293701

A possible folding pathway of bovine pancreatic RNase.

G Némethy, H A Scheraga.   

Abstract

A theoretical pathway for the folding of RNase into its native conformation is derived from the contact map computed from crystallographic coordinates. The pathway is based on the hypothesis of Tanaka and Scheraga, according to which localized conformations stabilized by short- and medium-range interactions form before those conformational features that are stabilized primarily by long-range interactions. The pathway deduced from the contact map agrees with experimental information on intermediates detected in the thermal unfolding of RNase and in immunochemical studies on the formation of stable antigenic sites when deduced RNase is oxidized with glutathione. Ambiguities in the interpretation of the contact map are resolved by the combination of structural information contained in the contact map and experimental information.

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Year:  1979        PMID: 293701      PMCID: PMC411798          DOI: 10.1073/pnas.76.12.6050

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  17 in total

1.  Computer simulation of protein folding.

Authors:  M Levitt; A Warshel
Journal:  Nature       Date:  1975-02-27       Impact factor: 49.962

2.  Calculation of protein tertiary structure.

Authors:  I D Kuntz; G M Crippen; P A Kollman; D Kimelman
Journal:  J Mol Biol       Date:  1976-10-05       Impact factor: 5.469

3.  Steps in the pathway of the thermal unfolding of ribonuclease A. A nonspecific photochemical surface-labeling study.

Authors:  R R Matheson; H A Scheraga
Journal:  Biochemistry       Date:  1979-06-12       Impact factor: 3.162

4.  Respective roles of short- and long-range interactions in protein folding.

Authors:  N Go; H Taketomi
Journal:  Proc Natl Acad Sci U S A       Date:  1978-02       Impact factor: 11.205

Review 5.  Protein folding.

Authors:  G Némethy; H A Scheraga
Journal:  Q Rev Biophys       Date:  1977-08       Impact factor: 5.318

6.  The three-dimensional structure of ribonuclease-S. Interpretation of an electron density map at a nominal resolution of 2 A.

Authors:  H W Wyckoff; D Tsernoglou; A W Hanson; J R Knox; B Lee; F M Richards
Journal:  J Biol Chem       Date:  1970-01-25       Impact factor: 5.157

7.  On the stabilization of ribonuclease S-protein by ribonuclease S-peptide.

Authors:  I Kato; C B Anfinsen
Journal:  J Biol Chem       Date:  1969-02-10       Impact factor: 5.157

8.  Local interactions as a structure determinant for protein molecules: III.

Authors:  W R Krigbaum; A Komoriya
Journal:  Biochim Biophys Acta       Date:  1979-01-25

9.  On the computation of the tertiary structure of globular proteins.

Authors:  M Ycas; N S Goel; J W Jacobsen
Journal:  J Theor Biol       Date:  1978-06-06       Impact factor: 2.691

10.  Influence of ordered backbone structure on protein folding. A study of some simple models.

Authors:  S Rackovsky; H A Scheraga
Journal:  Macromolecules       Date:  1978 Jan-Feb       Impact factor: 5.985

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  15 in total

1.  Exploring the origins of topological frustration: design of a minimally frustrated model of fragment B of protein A.

Authors:  J E Shea; J N Onuchic; C L Brooks
Journal:  Proc Natl Acad Sci U S A       Date:  1999-10-26       Impact factor: 11.205

2.  Applications of graph theory in protein structure identification.

Authors:  Yan Yan; Shenggui Zhang; Fang-Xiang Wu
Journal:  Proteome Sci       Date:  2011-10-14       Impact factor: 2.480

3.  Probing the folding free energy landscape of the Src-SH3 protein domain.

Authors:  Joan-Emma Shea; Jose N Onuchic; Charles L Brooks
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-22       Impact factor: 11.205

4.  The role of hydrophobic interactions in initiation and propagation of protein folding.

Authors:  H Jane Dyson; Peter E Wright; Harold A Scheraga
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-17       Impact factor: 11.205

5.  Effect of deamidation on folding of ribonuclease A.

Authors:  S Orrù; L Vitagliano; L Esposito; L Mazzarella; G Marino; M Ruoppolo
Journal:  Protein Sci       Date:  2000-12       Impact factor: 6.725

6.  A preliminary three-dimensional structure of angiogenin.

Authors:  K A Palmer; H A Scheraga; J F Riordan; B L Vallee
Journal:  Proc Natl Acad Sci U S A       Date:  1986-04       Impact factor: 11.205

7.  Prediction of probable pathways of folding in globular proteins.

Authors:  T Kikuchi; G Némethy; H A Scheraga
Journal:  J Protein Chem       Date:  1988-08

8.  Prediction of the location of structural domains in globular proteins.

Authors:  T Kikuchi; G Némethy; H A Scheraga
Journal:  J Protein Chem       Date:  1988-08

Review 9.  My 65 years in protein chemistry.

Authors:  Harold A Scheraga
Journal:  Q Rev Biophys       Date:  2015-04-08       Impact factor: 5.318

10.  Local structure involving histidine-12 in reduced S-sulfonated ribonuclease A detected by proton NMR spectroscopy under folding conditions.

Authors:  J K Swadesh; G T Montelione; T W Thannhauser; H A Scheraga
Journal:  Proc Natl Acad Sci U S A       Date:  1984-07       Impact factor: 11.205

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