Literature DB >> 273218

Respective roles of short- and long-range interactions in protein folding.

N Go, H Taketomi.   

Abstract

A lattice model of protein is studied by a Monte Carlo simulation method. The native conformation of the lattice protein molecule is stabilized by specific long-range and short-ranged interactions. By comparing results of simulation for different relative weights of the long- and short-range interactions, it is concluded that the specific long-range interactions are essential for highly cooperative stabilization of the native conformation and that the short-range interactions accelerate the folding and unfolding transitions.

Mesh:

Year:  1978        PMID: 273218      PMCID: PMC411294          DOI: 10.1073/pnas.75.2.559

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  3 in total

1.  Studies on protein folding, unfolding and fluctuations by computer simulation. I. The effect of specific amino acid sequence represented by specific inter-unit interactions.

Authors:  H Taketomi; Y Ueda; N Gō
Journal:  Int J Pept Protein Res       Date:  1975

Review 2.  The formation and stabilization of protein structure.

Authors:  C B Anfinsen
Journal:  Biochem J       Date:  1972-07       Impact factor: 3.857

3.  The influence of long-range interactions on the structure of myoglobin.

Authors:  R M Epand; H A Scheraga
Journal:  Biochemistry       Date:  1968-08       Impact factor: 3.162

  3 in total
  52 in total

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Authors:  A Irbäck; F Sjunnesson; S Wallin
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-05       Impact factor: 11.205

2.  Folding thermodynamics of model four-strand antiparallel beta-sheet proteins.

Authors:  Hyunbum Jang; Carol K Hall; Yaoqi Zhou
Journal:  Biophys J       Date:  2002-02       Impact factor: 4.033

3.  Thermodynamics and stability of a beta-sheet complex: molecular dynamics simulations on simplified off-lattice protein models.

Authors:  Hyunbum Jang; Carol K Hall; Yaoqi Zhou
Journal:  Protein Sci       Date:  2004-01       Impact factor: 6.725

4.  Assembly and kinetic folding pathways of a tetrameric beta-sheet complex: molecular dynamics simulations on simplified off-lattice protein models.

Authors:  Hyunbum Jang; Carol K Hall; Yaoqi Zhou
Journal:  Biophys J       Date:  2004-01       Impact factor: 4.033

5.  Protein folding pathways and kinetics: molecular dynamics simulations of beta-strand motifs.

Authors:  Hyunbum Jang; Carol K Hall; Yaoqi Zhou
Journal:  Biophys J       Date:  2002-08       Impact factor: 4.033

Review 6.  Protein folding.

Authors:  M A Basharov
Journal:  J Cell Mol Med       Date:  2003 Jul-Sep       Impact factor: 5.310

7.  Direct-coupling analysis of residue coevolution captures native contacts across many protein families.

Authors:  Faruck Morcos; Andrea Pagnani; Bryan Lunt; Arianna Bertolino; Debora S Marks; Chris Sander; Riccardo Zecchina; José N Onuchic; Terence Hwa; Martin Weigt
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-21       Impact factor: 11.205

8.  Non-native interactions play an effective role in protein folding dynamics.

Authors:  Patrícia F N Faísca; Ana Nunes; Rui D M Travasso; Eugene I Shakhnovich
Journal:  Protein Sci       Date:  2010-11       Impact factor: 6.725

9.  An information theoretic approach to macromolecular modeling: II. Force fields.

Authors:  Tiba Aynechi; Irwin D Kuntz
Journal:  Biophys J       Date:  2005-11       Impact factor: 4.033

10.  Putting the pathway back into protein folding.

Authors:  Jeffrey Skolnick
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-09       Impact factor: 11.205

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