Literature DB >> 29364224

A Method for Obtaining Serial Ultrathin Sections of Microorganisms in Transmission Electron Microscopy.

Masashi Yamaguchi1, Hiroji Chibana2.   

Abstract

Observing cells and cell components in three dimensions at high magnification in transmission electron microscopy requires preparing serial ultrathin sections of the specimen. Although preparing serial ultrathin sections is considered to be very difficult, it is rather easy if the proper method is used. In this paper, we show a step-by-step procedure for safely obtaining serial ultrathin sections of microorganisms. The key points of this method are: 1) to use the large part of the specimen and adjust the specimen surface and knife edge so that they are parallel to each other; 2) to cut serial sections in groups and avoid difficulty in separating sections using a pair of hair strands when retrieving a group of serial sections onto the slit grids; 3) to use a 'Section-holding loop' and avoid mixing up the order of the section groups; 4) to use a 'Water-surface-raising loop' and make sure the sections are positioned on the apex of the water and that they touch the grid first, in order to place them in the desired position on the grids; 5) to use the support film on an aluminum rack and make it easier to recover the sections on the grids and to avoid wrinkling of the support film; and 6) to use a staining tube and avoid accidentally breaking the support films with tweezers. This new method enables obtaining serial ultrathin sections without difficulty. The method makes it possible to analyze cell structures of microorganisms at high resolution in 3D, which cannot be achieved by using the automatic tape-collecting ultramicrotome method and serial block-face or focused ion beam scanning electron microscopy.

Mesh:

Year:  2018        PMID: 29364224      PMCID: PMC5908661          DOI: 10.3791/56235

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  17 in total

1.  Three-dimensional reconstruction of a pathogenic yeast Exophiala dermatitidis cell by freeze-substitution and serial sectioning electron microscopy.

Authors:  Masashi Yamaguchi; Sondip Kumar Biswas; Yasuyo Suzuki; Hiromitsu Furukawa; Kanji Takeo
Journal:  FEMS Microbiol Lett       Date:  2003-02-14       Impact factor: 2.742

2.  The spindle pole body of the pathogenic yeast Exophiala dermatitidis: variation in morphology and positional relationship to the nucleolus and the bud in interphase cells.

Authors:  Masashi Yamaguchi; Yoichi Kuwabara; Michiko Shimizu; Hiromitsu Furukawa; Hideo Nishioka; Kanji Takeo
Journal:  Eur J Cell Biol       Date:  2003-10       Impact factor: 4.492

3.  Quantitative three-dimensional structural analysis of Exophiala dermatitidis yeast cells by freeze-substitution and serial ultrathin sectioning.

Authors:  Sondip Kumar Biswas; Masashi Yamaguchi; Norihide Naoe; Teruhiro Takashima; Kanji Takeo
Journal:  J Electron Microsc (Tokyo)       Date:  2003

4.  Site-specific 3D imaging of cells and tissues with a dual beam microscope.

Authors:  Jurgen A W Heymann; Mike Hayles; Ingo Gestmann; Lucille A Giannuzzi; Ben Lich; Sriram Subramaniam
Journal:  J Struct Biol       Date:  2006-04-04       Impact factor: 2.867

5.  Prokaryote or eukaryote? A unique microorganism from the deep sea.

Authors:  Masashi Yamaguchi; Yuko Mori; Yoshimichi Kozuka; Hitoshi Okada; Katsuyuki Uematsu; Akihiro Tame; Hiromitsu Furukawa; Tadashi Maruyama; Cedric O'Driscoll Worman; Koji Yokoyama
Journal:  J Electron Microsc (Tokyo)       Date:  2012-09-28

6.  High-voltage electron microscopy tomography and structome analysis of unique spiral bacteria from the deep sea.

Authors:  Masashi Yamaguchi; Hiroyuki Yamada; Kimitaka Higuchi; Yuta Yamamoto; Shigeo Arai; Kazuyoshi Murata; Yuko Mori; Hiromitsu Furukawa; Mohammad Shorif Uddin; Hiroji Chibana
Journal:  Microscopy (Oxf)       Date:  2016-05-26       Impact factor: 1.571

7.  Smart specimen preparation for freeze substitution and serial ultrathin sectioning of yeast cells.

Authors:  Masashi Yamaguchi; Hitoshi Okada; Yuichi Namiki
Journal:  J Electron Microsc (Tokyo)       Date:  2009-03-16

8.  Serial block-face scanning electron microscopy to reconstruct three-dimensional tissue nanostructure.

Authors:  Winfried Denk; Heinz Horstmann
Journal:  PLoS Biol       Date:  2004-10-19       Impact factor: 8.029

9.  Structome analysis of virulent Mycobacterium tuberculosis, which survives with only 700 ribosomes per 0.1 fl of cytoplasm.

Authors:  Hiroyuki Yamada; Masashi Yamaguchi; Kinuyo Chikamatsu; Akio Aono; Satoshi Mitarai
Journal:  PLoS One       Date:  2015-01-28       Impact factor: 3.240

10.  Ordered kinetochore assembly in the human-pathogenic basidiomycetous yeast Cryptococcus neoformans.

Authors:  Lukasz Kozubowski; Vikas Yadav; Gautam Chatterjee; Shreyas Sridhar; Masashi Yamaguchi; Susumu Kawamoto; Indrani Bose; Joseph Heitman; Kaustuv Sanyal
Journal:  MBio       Date:  2013-10-01       Impact factor: 7.867

View more
  3 in total

1.  Easy ultrastructural insight into the internal morphology of biological specimens by Atomic Force Microscopy.

Authors:  Fabian Christopher Herrmann
Journal:  Sci Rep       Date:  2021-05-13       Impact factor: 4.379

2.  Simple, Fast and Efficient Methods for Analysing the Structural, Ultrastructural and Cellular Components of the Cell Wall.

Authors:  Renan Falcioni; Thaise Moriwaki; Renato Herrig Furlanetto; Marcos Rafael Nanni; Werner Camargos Antunes
Journal:  Plants (Basel)       Date:  2022-04-05

3.  Mycolicibacterium smegmatis, Basonym Mycobacterium smegmatis, Expresses Morphological Phenotypes Much More Similar to Escherichia coli Than Mycobacterium tuberculosis in Quantitative Structome Analysis and CryoTEM Examination.

Authors:  Hiroyuki Yamada; Masashi Yamaguchi; Yuriko Igarashi; Kinuyo Chikamatsu; Akio Aono; Yoshiro Murase; Yuta Morishige; Akiko Takaki; Hiroji Chibana; Satoshi Mitarai
Journal:  Front Microbiol       Date:  2018-09-11       Impact factor: 5.640

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.