| Literature DB >> 29362536 |
Chencheng Wang1, Lifu Qian1, Chenling Zhang2, Weibo Guo3, Tao Pan1, Jun Wu3, Hui Wang1, Baowei Zhang1.
Abstract
A new species Rana dabieshanensissp. n. is described from the Dabie Mountains in Anhui Province, China, based on morphological character differences and molecular analyses. The new species can be distinguished from its congeners by a combination of diagnostic characters. The results of phylogenetic analyses (based on 12s rRNA, 16s rRNA, ND2, Cyt b, RAG1, BDNF and Tyr) and genetic distances (based on Cyt b) indicate that the new species belongs to the Rana longicrus group, and is placed as the sister taxon to R. hanluica.Entities:
Keywords: Amphibians; molecular phylogeny; morphology; taxonomy
Year: 2017 PMID: 29362536 PMCID: PMC5769725 DOI: 10.3897/zookeys.724.19383
Source DB: PubMed Journal: Zookeys ISSN: 1313-2970 Impact factor: 1.546
Figure 1.Distribution of sp. n. in Dabie Mountains (Anhui, Hubei, and Henan provinces, central China). Occurrence record is marked with green mark.
Primers used for PCR and sequencing.
| Locus | Primer Name | Sequences (5’ end 3’ end) | Temperature (°C) | Source |
|---|---|---|---|---|
| 12S | L2519 | AAACTGGGATTAGATACCCCACTAT | 50 | Kocher et al. (1989) |
| H3296 | GCTAGACCATKATGCAAAAGGTA | 50 | Kocher et al. (1989) | |
| 16S | 16SAR | AACGCTAAGATGAACCCTAAAAAGTTCT | 50 | Kocher et al. (1989) |
| R16 | ATAGTGGGGTATCTAATCCCAGTTTGTTTT | 50 | et al. (2000) | |
| ND2 | HERP322 | TYCGARGACAGAGGTTTRAG | 42 |
|
| HERP323 | CAYCCACGRGCYATYGAA | 42 |
| |
| Cyt | HERP328 | GAAAARCTRTCGTTGTWATTCAACTA | 50 |
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| HERP329 | CTACKGGTTGTCCYCCRATTCATGT | 50 |
| |
| Tyr | Tyr1G | TGCTGGGCRTCTCTCCARTCCCA | 50 | Bossuyt and Milinkovitch (2000) |
| Tyr1B | AGGTCCTCYTRAGGAAGGAATG | 50 | Bossuyt and Milinkovitch (2000) | |
| RAG1 | AmpF2 | ACNGGNMGICARATCTTYCARCC | 52 | Hoegg et al. (2004) |
| AmpR2 | GGTGYTTYAACACATCTTCCATYTCRTA | 52 | Hoegg et al. (2004) | |
| BDNF | BDNF 2F | GAGTGGGTCAAGAGGAGG | 41 |
|
| BDNF_2R | ACTGGGTAGTTCGGCATT | 41 |
|
Species, sample localities, voucher museum numbers and GenBank accession numbers for DNA sequences of species used in the phylogenetic analyses.
| Species | Locality | Voucher | GenBank No. | Reference | |||||
|---|---|---|---|---|---|---|---|---|---|
| 12S-16S | Cyt | ND2 | RAG1 | BDNF | Tyr | ||||
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| China: Anhui Province: Dabie Mountains area | AHU2016R001 | This Study | ||||||
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| China: Anhui Province: Dabie Mountains area | AHU2016R002 | N/A | N/A | N/A | N/A | N/A | This Study | |
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| China: Anhui Province: Dabie Mountains area | AHU2016R003 | N/A | N/A | N/A | N/A | N/A | This Study | |
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| China: Anhui Province: Dabie Mountains area | AHU2016R004 | N/A | N/A | N/A | N/A | N/A | This Study | |
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| China: Anhui Province: Dabie Mountains area | AHU2016R005 | N/A | N/A | N/A | N/A | N/A | This Study | |
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| China: Anhui Province: Dabie Mountains area | AHU2016R006 | N/A | N/A | N/A | N/A | N/A | This Study | |
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| China: Anhui Province: Dabie Mountains area | AHU2016R007 | N/A | N/A | N/A | N/A | N/A | This Study | |
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| Russia: Tomskaya: Teguldetskii district | MSUZP-SLK-RUS49 |
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| Russia: Mordovia: Chamzinskii district | MSUZP-SLK-MKR21 |
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| China: Xinjiang: 47tuan | KIZ-XJ0251 |
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| China: Sichuan: Zhaojue | SCUM0405170CJ |
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| China: Shaanxi: Huxian | KIZ-RD05SHX01 |
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| China: Shandong: Culaishan shan | KIZ-SD080501 |
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| Russia: Primorye region: Khasanskii District | MSUZP-IVM-1d |
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| China: Guangxi: Maoershan shan | KIZGX07112915 |
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| South Korea | MMS 231 | N/A |
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| Japan: Isumi-shi: Chiba Prefecture | KIZ-YPX11775 |
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| China: Hunan: Jiemuxi | KIZ-HUN0708013 | N/A |
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| China: Qinghai: Qinghai Lake | KIZCJ06102001 |
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| China: Shandong: Kunyu shan | KIZ-HUI040001 |
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| China: Taiwan: Xiangtianhu: Miaosu | NMNS15022 |
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| China: Sichuan: Zhangcun: Hongya | SCUM0405196CJ |
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| China: Zhejiang: Zhenhai | KIZ0803271 | N/A |
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| South Korea | MMS 223 |
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| China: Taiwan: Kaohsiung | SCUM0405175CJ |
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| China: Sichuan: Hongya: Zhangcun | SCUM0405190CJ |
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| Vietnam: Lam Dong: Loc Bao | ABV 00203 |
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| China: Sichuan: Zhaojue | CIB- |
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| China: Sichuan: Weining | SCUM0405171 |
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| China: Sichuan: Hongya | SCUM-045199CJ |
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Sequence information (a) and results of model selection by PartitionFinder (b). “V” and “PI” indicated the variable sites and parsimony-informative sites of each locus, respectively.
| (a) | |||
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| 12-16s rRNA | 1743 | 555 | 336 |
| Cyt | 834 | 306 | 262 |
| ND2 | 726 | 392 | 323 |
| RAG1 | 1191 | 158 | 86 |
| Tyr | 456 | 73 | 31 |
| BDNF | 454 | 31 | 10 |
| (b) | |||
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| ||
| GTR+I+G | 12S-16S, ND2-2nd | ||
| HKY+I | RAG-3rd, Tyr-1st, Tyr-3rd, BDNF-1st, BDNF-2nd | ||
| SYM+I+G | Cyt | ||
| HKY+I+G | ND2-3rd, RAG1-1st, RAG1-2nd, Cyt | ||
| GTR+I | ND2-1st, Cyt | ||
| K80+I | BDNF-3rd | ||
Measurements [in mm; mean±SD (range)] of adult specimens of sp. n.
| Character |
| ||||
|---|---|---|---|---|---|
| Holotype | Males (8) | Mean±SD | Females (2) | Mean | |
|
| 62.8 | 50.9–62.8 | 57.1±4.1 | 53.0–68.3 | 60.7 |
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| 17.8 | 16.0–19.0 | 17.8±1.1 | 18.0–19.7 | 18.8 |
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| 17.6 | 15.3–18.9 | 17.4±1.1 | 16.7–18.8 | 17.8 |
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| 8.4 | 7.5–9.5 | 8.4±0.8 | 7.9–8.5 | 8.2 |
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| 5.5 | 3.9–5.5 | 4.5±0.6 | 4.3–4.6 | 4.5 |
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| 5.5 | 3.9–5.5 | 4.5±0.6 | 4.3–4.5 | 4.4 |
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| 3.6 | 2.9–3.8 | 3.4±0.4 | 3.6–3.7 | 3.6 |
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| 4.8 | 4.1–5.7 | 4.8±0.6 | 4.6–4.7 | 4.5 |
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| 4.0 | 3.5–5.2 | 4.4±0.6 | 4.2–4.3 | 4.3 |
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| 27.6 | 21.4–27.6 | 24.7±2.1 | 23.4–26.7 | 24.5 |
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| 8.1 | 5.6–8.1 | 6.6±1.2 | 4.9–8.1 | 5.2 |
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| 14.8 | 13.1–14.8 | 13.8±0.7 | 13.3–13.6 | 13.5 |
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| 129.1 | 100.4–129.1 | 115.5±10.6 | 102.4–121.4 | 111.9 |
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| 40.6 | 31.4–40.6 | 35.1±3.3 | 30.4–37.6 | 34.0 |
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| 8.4 | 5.9–8.4 | 7.5±0.9 | 6.4–6.7 | 6.5 |
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| 53.2 | 43.1–53.2 | 48.6±3.4 | 44.3–51.2 | 47.7 |
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| 35.5 | 27.6–35.1 | 32.8±2.8 | 27.8–35.6 | 31.7 |
Figure 2.The Bayesian consensus tree resulting from analysis of four mitochondrial genes (12S rRNA, 16S rRNA, ND2 and Cyt b genes) and three nuclear genes (Tyr, RAG1 and BDNF) dataset for Chinese species. The new species is in bold. Number near the nodes are Bayesian posterior probabilities / Maximum Likelihood bootstrap values but only when values are ≥ 0.95 and ≥ 70, respectively.
The pairwise uncorrected p-distance (%) of the Cyt b partial sequence (834 bp) used in this study. 1: sp. n; 2: ; 3: ; 4:; 5:; 6: ; 7: ; 8: ; 9: ; 10:; 11:; 12: ; 13: ; 14: ; 15: ; 16: ; 17: ; 18: ; 19: ; 20 : ; 21: ; 22: ; 23: . The number in bold present the distance between sp. n. and the species of analyzed in this study.
| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| 0.042 | |||||||||||||||||||||
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| 0.032 | 0.053 | ||||||||||||||||||||
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| 0.148 | 0.159 | 0.141 | |||||||||||||||||||
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| 0.086 | 0.086 | 0.091 | 0.133 | ||||||||||||||||||
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| 0.197 | 0.208 | 0.190 | 0.171 | 0.186 | |||||||||||||||||
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| 0.139 | 0.161 | 0.141 | 0.144 | 0.138 | 0.172 | ||||||||||||||||
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| 0.109 | 0.112 | 0.116 | 0.156 | 0.093 | 0.193 | 0.145 | |||||||||||||||
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| 0.090 | 0.102 | 0.106 | 0.167 | 0.085 | 0.193 | 0.150 | 0.111 | ||||||||||||||
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| 0.178 | 0.190 | 0.176 | 0.156 | 0.180 | 0.063 | 0.160 | 0.186 | 0.191 | |||||||||||||
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| 0.173 | 0.178 | 0.169 | 0.183 | 0.181 | 0.121 | 0.162 | 0.174 | 0.188 | 0.132 | ||||||||||||
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| 0.173 | 0.181 | 0.171 | 0.156 | 0.175 | 0.059 | 0.151 | 0.178 | 0.182 | 0.066 | 0.112 | |||||||||||
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| 0.207 | 0.219 | 0.213 | 0.194 | 0.186 | 0.198 | 0.196 | 0.193 | 0.172 | 0.182 | 0.191 | 0.187 | ||||||||||
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| 0.206 | 0.226 | 0.213 | 0.201 | 0.204 | 0.174 | 0.166 | 0.214 | 0.211 | 0.186 | 0.177 | 0.168 | 0.188 | |||||||||
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| 0.157 | 0.172 | 0.166 | 0.184 | 0.162 | 0.163 | 0.148 | 0.172 | 0.166 | 0.152 | 0.167 | 0.146 | 0.155 | 0.136 | ||||||||
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| 0.197 | 0.206 | 0.195 | 0.194 | 0.190 | 0.209 | 0.204 | 0.191 | 0.196 | 0.191 | 0.189 | 0.189 | 0.144 | 0.199 | 0.180 | |||||||
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| 0.183 | 0.187 | 0.177 | 0.196 | 0.194 | 0.208 | 0.181 | 0.184 | 0.192 | 0.189 | 0.186 | 0.187 | 0.210 | 0.192 | 0.191 | 0.219 | ||||||
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| 0.199 | 0.208 | 0.200 | 0.199 | 0.197 | 0.212 | 0.199 | 0.202 | 0.193 | 0.197 | 0.196 | 0.190 | 0.152 | 0.200 | 0.185 | 0.022 | 0.220 | |||||
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| 0.192 | 0.209 | 0.193 | 0.192 | 0.181 | 0.197 | 0.169 | 0.204 | 0.201 | 0.183 | 0.182 | 0.177 | 0.176 | 0.192 | 0.155 | 0.199 | 0.222 | 0.192 | ||||
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| 0.207 | 0.235 | 0.210 | 0.220 | 0.210 | 0.193 | 0.205 | 0.211 | 0.197 | 0.198 | 0.189 | 0.182 | 0.202 | 0.194 | 0.182 | 0.206 | 0.197 | 0.194 | 0.204 | |||
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| 0.279 | 0.262 | 0.266 | 0.255 | 0.267 | 0.271 | 0.252 | 0.283 | 0.267 | 0.259 | 0.267 | 0.254 | 0.261 | 0.277 | 0.237 | 0.273 | 0.292 | 0.270 | 0.273 | 0.259 | ||
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| 0.195 | 0.202 | 0.185 | 0.192 | 0.201 | 0.198 | 0.194 | 0.193 | 0.211 | 0.191 | 0.203 | 0.185 | 0.217 | 0.192 | 0.194 | 0.226 | 0.046 | 0.222 | 0.229 | 0.204 | 0.282 |
Figure 3.Dorsal (A) and lateral view (B) of the holotype (AHU2016R001, male) of sp. n. in life.
Figure 4.A volar view of the left hand of the holotype in life (AHU2016R001, male) B volar view of the right hand of female paratype in preservative (AHU2016R010, famle) C thenar view of the right foot of the holotype in life (AHU2016R001, male) D thenar view of the right foot of the female paratype in preservative (AHU2016R010, famle).