Literature DB >> 29362467

Moving towards a molecular taxonomy of autoimmune rheumatic diseases.

Guillermo Barturen1, Lorenzo Beretta2, Ricard Cervera3, Ronald Van Vollenhoven4, Marta E Alarcón-Riquelme1,5.   

Abstract

Autoimmune rheumatic diseases pose many problems that have, in general, already been solved in the field of cancer. The heterogeneity of each disease, the clinical similarities and differences between different autoimmune rheumatic diseases and the large number of patients that remain without a diagnosis underline the need to reclassify these diseases via new approaches. Knowledge about the molecular basis of systemic autoimmune diseases, along with the availability of bioinformatics tools capable of handling and integrating large volumes of various types of molecular data at once, offer the possibility of reclassifying these diseases. A new taxonomy could lead to the discovery of new biomarkers for patient stratification and prognosis. Most importantly, this taxonomy might enable important changes in clinical trial design to reach the expected outcomes or the design of molecularly targeted therapies. In this Review, we discuss the basis for a new molecular taxonomy for autoimmune rheumatic diseases. We highlight the evidence surrounding the idea that these diseases share molecular features related to their pathogenesis and development and discuss previous attempts to classify these diseases. We evaluate the tools available to analyse and combine different types of molecular data. Finally, we introduce PRECISESADS, a project aimed at reclassifying the systemic autoimmune diseases.

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Year:  2018        PMID: 29362467     DOI: 10.1038/nrrheum.2017.220

Source DB:  PubMed          Journal:  Nat Rev Rheumatol        ISSN: 1759-4790            Impact factor:   20.543


  148 in total

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Journal:  Ann Rheum Dis       Date:  2010-09       Impact factor: 19.103

2.  Updating the American College of Rheumatology revised criteria for the classification of systemic lupus erythematosus.

Authors:  M C Hochberg
Journal:  Arthritis Rheum       Date:  1997-09

3.  The first genome-wide association study identifying new susceptibility loci for obstetric antiphospholipid syndrome.

Authors:  Mayumi Sugiura-Ogasawara; Yosuke Omae; Minae Kawashima; Licht Toyo-Oka; Seik-Soon Khor; Hiromi Sawai; Tetsuya Horita; Tatsuya Atsumi; Atsuko Murashima; Daisuke Fujita; Tomio Fujita; Shinji Morimoto; Eriko Morishita; Shinji Katsuragi; Tamao Kitaori; Kinue Katano; Yasuhiko Ozaki; Katsushi Tokunaga
Journal:  J Hum Genet       Date:  2017-04-20       Impact factor: 3.172

4.  Personalized Immunomonitoring Uncovers Molecular Networks that Stratify Lupus Patients.

Authors:  Romain Banchereau; Seunghee Hong; Brandi Cantarel; Nicole Baldwin; Jeanine Baisch; Michelle Edens; Alma-Martina Cepika; Peter Acs; Jacob Turner; Esperanza Anguiano; Parvathi Vinod; Shaheen Khan; Gerlinde Obermoser; Derek Blankenship; Edward Wakeland; Lorien Nassi; Alisa Gotte; Marilynn Punaro; Yong-Jun Liu; Jacques Banchereau; Jose Rossello-Urgell; Tracey Wright; Virginia Pascual
Journal:  Cell       Date:  2016-06-02       Impact factor: 41.582

Review 5.  Epidemiology and natural history of systemic sclerosis.

Authors:  V D Steen; T A Medsger
Journal:  Rheum Dis Clin North Am       Date:  1990-02       Impact factor: 2.670

6.  A combined large-scale meta-analysis identifies COG6 as a novel shared risk locus for rheumatoid arthritis and systemic lupus erythematosus.

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Journal:  Ann Rheum Dis       Date:  2016-05-18       Impact factor: 19.103

7.  ITGAM coding variant (rs1143679) influences the risk of renal disease, discoid rash and immunological manifestations in patients with systemic lupus erythematosus with European ancestry.

Authors:  Xana Kim-Howard; Amit K Maiti; Juan-Manuel Anaya; Gail R Bruner; Elizabeth Brown; Joan T Merrill; Jeffrey C Edberg; Michelle A Petri; John D Reveille; Rosalind Ramsey-Goldman; Graciela S Alarcon; Timothy J Vyse; Gary Gilkeson; Robert P Kimberly; Judith A James; Joel M Guthridge; John B Harley; Swapan K Nath
Journal:  Ann Rheum Dis       Date:  2009-11-25       Impact factor: 19.103

8.  Comparison between 3 diagnostic criteria for mixed connective tissue disease. Study of 593 patients.

Authors:  D Alarcón-Segovia; M H Cardiel
Journal:  J Rheumatol       Date:  1989-03       Impact factor: 4.666

9.  Unsupervised data-driven stratification of mentalizing heterogeneity in autism.

Authors:  Michael V Lombardo; Meng-Chuan Lai; Bonnie Auyeung; Rosemary J Holt; Carrie Allison; Paula Smith; Bhismadev Chakrabarti; Amber N V Ruigrok; John Suckling; Edward T Bullmore; Christine Ecker; Michael C Craig; Declan G M Murphy; Francesca Happé; Simon Baron-Cohen
Journal:  Sci Rep       Date:  2016-10-18       Impact factor: 4.379

10.  A reference panel of 64,976 haplotypes for genotype imputation.

Authors:  Shane McCarthy; Sayantan Das; Warren Kretzschmar; Olivier Delaneau; Andrew R Wood; Alexander Teumer; Hyun Min Kang; Christian Fuchsberger; Petr Danecek; Kevin Sharp; Yang Luo; Carlo Sidore; Alan Kwong; Nicholas Timpson; Seppo Koskinen; Scott Vrieze; Laura J Scott; He Zhang; Anubha Mahajan; Jan Veldink; Ulrike Peters; Carlos Pato; Cornelia M van Duijn; Christopher E Gillies; Ilaria Gandin; Massimo Mezzavilla; Arthur Gilly; Massimiliano Cocca; Michela Traglia; Andrea Angius; Jeffrey C Barrett; Dorrett Boomsma; Kari Branham; Gerome Breen; Chad M Brummett; Fabio Busonero; Harry Campbell; Andrew Chan; Sai Chen; Emily Chew; Francis S Collins; Laura J Corbin; George Davey Smith; George Dedoussis; Marcus Dorr; Aliki-Eleni Farmaki; Luigi Ferrucci; Lukas Forer; Ross M Fraser; Stacey Gabriel; Shawn Levy; Leif Groop; Tabitha Harrison; Andrew Hattersley; Oddgeir L Holmen; Kristian Hveem; Matthias Kretzler; James C Lee; Matt McGue; Thomas Meitinger; David Melzer; Josine L Min; Karen L Mohlke; John B Vincent; Matthias Nauck; Deborah Nickerson; Aarno Palotie; Michele Pato; Nicola Pirastu; Melvin McInnis; J Brent Richards; Cinzia Sala; Veikko Salomaa; David Schlessinger; Sebastian Schoenherr; P Eline Slagboom; Kerrin Small; Timothy Spector; Dwight Stambolian; Marcus Tuke; Jaakko Tuomilehto; Leonard H Van den Berg; Wouter Van Rheenen; Uwe Volker; Cisca Wijmenga; Daniela Toniolo; Eleftheria Zeggini; Paolo Gasparini; Matthew G Sampson; James F Wilson; Timothy Frayling; Paul I W de Bakker; Morris A Swertz; Steven McCarroll; Charles Kooperberg; Annelot Dekker; David Altshuler; Cristen Willer; William Iacono; Samuli Ripatti; Nicole Soranzo; Klaudia Walter; Anand Swaroop; Francesco Cucca; Carl A Anderson; Richard M Myers; Michael Boehnke; Mark I McCarthy; Richard Durbin
Journal:  Nat Genet       Date:  2016-08-22       Impact factor: 38.330

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  27 in total

1.  Moving towards a molecular taxonomy of autoimmune rheumatic diseases.

Authors:  Guillermo Barturen; Lorenzo Beretta; Ricard Cervera; Ronald Van Vollenhoven; Marta E Alarcón-Riquelme
Journal:  Nat Rev Rheumatol       Date:  2018-02-21       Impact factor: 20.543

Review 2.  Reflections on 'older' drugs: learning new lessons in rheumatology.

Authors:  S A Kerrigan; I B McInnes
Journal:  Nat Rev Rheumatol       Date:  2020-02-17       Impact factor: 20.543

3.  Fexofenadine inhibits TNF signaling through targeting to cytosolic phospholipase A2 and is therapeutic against inflammatory arthritis.

Authors:  Ronghan Liu; Yuehong Chen; Wenyu Fu; Shuya Wang; Yazhou Cui; Xiangli Zhao; Zi-Ning Lei; Aubryanna Hettinghouse; Jody Liu; Chao Wang; Chen Zhang; Yufei Bi; Guozhi Xiao; Zhe-Sheng Chen; Chuan-Ju Liu
Journal:  Ann Rheum Dis       Date:  2019-07-13       Impact factor: 19.103

Review 4.  A Summary on the Genetics of Systemic Lupus Erythematosus, Rheumatoid Arthritis, Systemic Sclerosis, and Sjögren's Syndrome.

Authors:  Lourdes Ortíz-Fernández; Javier Martín; Marta E Alarcón-Riquelme
Journal:  Clin Rev Allergy Immunol       Date:  2022-06-24       Impact factor: 8.667

Review 5.  The promise of precision medicine in rheumatology.

Authors:  Joel M Guthridge; Catriona A Wagner; Judith A James
Journal:  Nat Med       Date:  2022-07-04       Impact factor: 87.241

6.  Lymphocyte subset clustering analysis in treatment-naive patients with systemic lupus erythematosus.

Authors:  Zhimin Lu; Weiping Li; Yawei Tang; Zhanyun Da; Xia Li
Journal:  Clin Rheumatol       Date:  2020-10-31       Impact factor: 2.980

7.  Pleiotropy of systemic lupus erythematosus risk alleles and cardiometabolic disorders: A phenome-wide association study and inverse-variance weighted meta-analysis.

Authors:  Vivian K Kawai; Mingjian Shi; Ge Liu; QiPing Feng; WeiQi Wei; Cecilia P Chung; Theresa L Walunas; Adam S Gordon; James G Linneman; Scott J Hebbring; John B Harley; Nancy J Cox; Dan M Roden; C Michael Stein; Jonathan D Mosley
Journal:  Lupus       Date:  2021-05-12       Impact factor: 2.911

8.  Data processing workflow for large-scale immune monitoring studies by mass cytometry.

Authors:  Paulina Rybakowska; Sofie Van Gassen; Katrien Quintelier; Yvan Saeys; Marta E Alarcón-Riquelme; Concepción Marañón
Journal:  Comput Struct Biotechnol J       Date:  2021-05-21       Impact factor: 7.271

9.  Rare case of bilateral wrist and foot drop from SLE-related vasculitic polyneuropathy.

Authors:  Soujanya Sodavarapu; Rajani Rudrangi; Jeffrey Hoffman
Journal:  BMJ Case Rep       Date:  2020-01-15

10.  A comprehensive database for integrated analysis of omics data in autoimmune diseases.

Authors:  Marta E Alarcón-Riquelme; Pedro Carmona-Sáez; Jordi Martorell-Marugán; Raúl López-Domínguez; Adrián García-Moreno; Daniel Toro-Domínguez; Juan Antonio Villatoro-García; Guillermo Barturen; Adoración Martín-Gómez; Kevin Troule; Gonzalo Gómez-López; Fátima Al-Shahrour; Víctor González-Rumayor; María Peña-Chilet; Joaquín Dopazo; Julio Sáez-Rodríguez
Journal:  BMC Bioinformatics       Date:  2021-06-24       Impact factor: 3.169

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