Literature DB >> 29361316

Structure and Conformational Dynamics of the Human Spliceosomal Bact Complex.

David Haselbach1, Ilya Komarov2, Dmitry E Agafonov2, Klaus Hartmuth2, Benjamin Graf1, Olexandr Dybkov2, Henning Urlaub3, Berthold Kastner2, Reinhard Lührmann4, Holger Stark5.   

Abstract

The spliceosome is a highly dynamic macromolecular complex that precisely excises introns from pre-mRNA. Here we report the cryo-EM 3D structure of the human Bact spliceosome at 3.4 Å resolution. In the Bact state, the spliceosome is activated but not catalytically primed, so that it is functionally blocked prior to the first catalytic step of splicing. The spliceosomal core is similar to the yeast Bact spliceosome; important differences include the presence of the RNA helicase aquarius and peptidyl prolyl isomerases. To examine the overall dynamic behavior of the purified spliceosome, we developed a principal component analysis-based approach. Calculating the energy landscape revealed eight major conformational states, which we refined to higher resolution. Conformational differences of the highly flexible structural components between these eight states reveal how spliceosomal components contribute to the assembly of the spliceosome, allowing it to generate a dynamic interaction network required for its subsequent catalytic activation.
Copyright © 2018 Elsevier Inc. All rights reserved.

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Year:  2018        PMID: 29361316     DOI: 10.1016/j.cell.2018.01.010

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  70 in total

Review 1.  Challenges and opportunities in cryo-EM single-particle analysis.

Authors:  Dmitry Lyumkis
Journal:  J Biol Chem       Date:  2019-02-25       Impact factor: 5.157

2.  An Allosteric Network for Spliceosome Activation Revealed by High-Throughput Suppressor Analysis in Saccharomyces cerevisiae.

Authors:  David A Brow
Journal:  Genetics       Date:  2019-03-21       Impact factor: 4.562

3.  A U2-snRNP-independent role of SF3b in promoting mRNA export.

Authors:  Ke Wang; Changping Yin; Xian Du; Suli Chen; Jianshu Wang; Li Zhang; Lantian Wang; Yong Yu; Binkai Chi; Min Shi; Changshou Wang; Robin Reed; Yu Zhou; Jing Huang; Hong Cheng
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-28       Impact factor: 11.205

Review 4.  Molecular Mechanisms of pre-mRNA Splicing through Structural Biology of the Spliceosome.

Authors:  Chuangye Yan; Ruixue Wan; Yigong Shi
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-01-02       Impact factor: 10.005

Review 5.  Structures of SF3b1 reveal a dynamic Achilles heel of spliceosome assembly: Implications for cancer-associated abnormalities and drug discovery.

Authors:  Debanjana Maji; Alan Grossfield; Clara L Kielkopf
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2019-11-09       Impact factor: 4.490

Review 6.  mRNA Editing, Processing and Quality Control in Caenorhabditis elegans.

Authors:  Joshua A Arribere; Hidehito Kuroyanagi; Heather A Hundley
Journal:  Genetics       Date:  2020-07       Impact factor: 4.562

7.  Prp8 impacts cryptic but not alternative splicing frequency.

Authors:  Megan Mayerle; Samira Yitiz; Cameron Soulette; Lucero E Rogel; Andrea Ramirez; J Matthew Ragle; Sol Katzman; Christine Guthrie; Alan M Zahler
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-23       Impact factor: 11.205

8.  Global donor and acceptor splicing site kinetics in human cells.

Authors:  Leonhard Wachutka; Livia Caizzi; Julien Gagneur; Patrick Cramer
Journal:  Elife       Date:  2019-04-26       Impact factor: 8.140

9.  Hybrid Electron Microscopy Normal Mode Analysis with Scipion.

Authors:  Mohamad Harastani; Carlos Oscar S Sorzano; Slavica Jonić
Journal:  Protein Sci       Date:  2019-11-20       Impact factor: 6.725

Review 10.  Biology of the mRNA Splicing Machinery and Its Dysregulation in Cancer Providing Therapeutic Opportunities.

Authors:  Maxime Blijlevens; Jing Li; Victor W van Beusechem
Journal:  Int J Mol Sci       Date:  2021-05-12       Impact factor: 5.923

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