Literature DB >> 29360484

Cancer-Associated Long Noncoding RNA SMRT-2 Controls Epidermal Differentiation.

Carolyn S Lee1, Angela Mah2, Cody J Aros3, Vanessa Lopez-Pajares2, Aparna Bhaduri4, Dan E Webster5, Markus Kretz6, Paul A Khavari7.   

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Year:  2018        PMID： 29360484      PMCID： PMC6814294          DOI： 10.1016/j.jid.2018.01.003

Source DB:  PubMed          Journal:  J Invest Dermatol        ISSN： 0022-202X            Impact factor:   8.551


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  15 in total

1.  Identification of novel transcripts in annotated genomes using RNA-Seq.

Authors:  Adam Roberts; Harold Pimentel; Cole Trapnell; Lior Pachter
Journal:  Bioinformatics       Date:  2011-06-21       Impact factor: 6.937

2.  Molecular signatures database (MSigDB) 3.0.

Authors:  Arthur Liberzon; Aravind Subramanian; Reid Pinchback; Helga Thorvaldsdóttir; Pablo Tamayo; Jill P Mesirov
Journal:  Bioinformatics       Date:  2011-05-05       Impact factor: 6.937

3.  Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses.

Authors:  Moran N Cabili; Cole Trapnell; Loyal Goff; Magdalena Koziol; Barbara Tazon-Vega; Aviv Regev; John L Rinn
Journal:  Genes Dev       Date:  2011-09-02       Impact factor: 11.361

Review 4.  Genetic pathways in disorders of epidermal differentiation.

Authors:  Vanessa Lopez-Pajares; Karen Yan; Brian J Zarnegar; Katherine L Jameson; Paul A Khavari
Journal:  Trends Genet       Date:  2012-11-08       Impact factor: 11.639

5.  The Pfam protein families database.

Authors:  Robert D Finn; Jaina Mistry; John Tate; Penny Coggill; Andreas Heger; Joanne E Pollington; O Luke Gavin; Prasad Gunasekaran; Goran Ceric; Kristoffer Forslund; Liisa Holm; Erik L L Sonnhammer; Sean R Eddy; Alex Bateman
Journal:  Nucleic Acids Res       Date:  2009-11-17       Impact factor: 16.971

6.  Control of somatic tissue differentiation by the long non-coding RNA TINCR.

Authors:  Markus Kretz; Zurab Siprashvili; Ci Chu; Dan E Webster; Ashley Zehnder; Kun Qu; Carolyn S Lee; Ross J Flockhart; Abigail F Groff; Jennifer Chow; Danielle Johnston; Grace E Kim; Robert C Spitale; Ryan A Flynn; Grace X Y Zheng; Subhadra Aiyer; Arjun Raj; John L Rinn; Howard Y Chang; Paul A Khavari
Journal:  Nature       Date:  2012-12-02       Impact factor: 49.962

7.  Long Noncoding RNA PICSAR Promotes Growth of Cutaneous Squamous Cell Carcinoma by Regulating ERK1/2 Activity.

Authors:  Minna Piipponen; Liisa Nissinen; Mehdi Farshchian; Pilvi Riihilä; Atte Kivisaari; Markku Kallajoki; Juha Peltonen; Sirkku Peltonen; Veli-Matti Kähäri
Journal:  J Invest Dermatol       Date:  2016-04-02       Impact factor: 8.551

8.  Invasive three-dimensional organotypic neoplasia from multiple normal human epithelia.

Authors:  Todd W Ridky; Jennifer M Chow; David J Wong; Paul A Khavari
Journal:  Nat Med       Date:  2010-11-21       Impact factor: 53.440

9.  PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions.

Authors:  Michael F Lin; Irwin Jungreis; Manolis Kellis
Journal:  Bioinformatics       Date:  2011-07-01       Impact factor: 6.937

10.  Full-length transcriptome assembly from RNA-Seq data without a reference genome.

Authors:  Manfred G Grabherr; Brian J Haas; Moran Yassour; Joshua Z Levin; Dawn A Thompson; Ido Amit; Xian Adiconis; Lin Fan; Raktima Raychowdhury; Qiandong Zeng; Zehua Chen; Evan Mauceli; Nir Hacohen; Andreas Gnirke; Nicholas Rhind; Federica di Palma; Bruce W Birren; Chad Nusbaum; Kerstin Lindblad-Toh; Nir Friedman; Aviv Regev
Journal:  Nat Biotechnol       Date:  2011-05-15       Impact factor: 54.908
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  5 in total

1.  The long non-coding RNA LINC00941 and SPRR5 are novel regulators of human epidermal homeostasis.

Authors:  Christian Ziegler; Johannes Graf; Stefan Faderl; Jessica Schedlbauer; Nicholas Strieder; Bianca Förstl; Rainer Spang; Astrid Bruckmann; Rainer Merkl; Sonja Hombach; Markus Kretz
Journal:  EMBO Rep       Date:  2019-01-08       Impact factor: 8.807

2.  MAB21L4 Deficiency Drives Squamous Cell Carcinoma via Activation of RET.

Authors:  Ankit Srivastava; Cristina Tommasi; Dane Sessions; Angela Mah; Tomas Bencomo; Jasmine M Garcia; Tiffany Jiang; Michael Lee; Joseph Y Shen; Lek Wei Seow; Audrey Nguyen; Kimal Rajapakshe; Cristian Coarfa; Kenneth Y Tsai; Vanessa Lopez-Pajares; Carolyn S Lee
Journal:  Cancer Res       Date:  2022-09-02       Impact factor: 13.312

3.  N6 -methyladenosine modification of lncRNA Pvt1 governs epidermal stemness.

Authors:  Jimmy Lee; Yuchen Wu; Bryan T Harada; Yuanyuan Li; Jing Zhao; Chuan He; Yanlei Ma; Xiaoyang Wu
Journal:  EMBO J       Date:  2021-03-17       Impact factor: 11.598

Review 4.  Oh, the Mutations You'll Acquire! A Systematic Overview of Cutaneous Squamous Cell Carcinoma.

Authors:  Stephenie Droll; Xiaomin Bao
Journal:  Cell Physiol Biochem       Date:  2021-09-22

5.  Mutant collagen COL11A1 enhances cancerous invasion.

Authors:  Carolyn S Lee; Zurab Siprashvili; Angela Mah; Tomas Bencomo; Lara E Elcavage; Yonglu Che; Rajani M Shenoy; Sumaira Z Aasi; Paul A Khavari
Journal:  Oncogene       Date:  2021-09-28       Impact factor: 9.867
  5 in total

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