Literature DB >> 29360430

Image analysis and machine learning for detecting malaria.

Mahdieh Poostchi1, Kamolrat Silamut2, Richard J Maude3, Stefan Jaeger4, George Thoma1.   

Abstract

Malaria remains a major burden on global health, with roughly 200 million cases worldwide and more than 400,000 deaths per year. Besides biomedical research and political efforts, modern information technology is playing a key role in many attempts at fighting the disease. One of the barriers toward a successful mortality reduction has been inadequate malaria diagnosis in particular. To improve diagnosis, image analysis software and machine learning methods have been used to quantify parasitemia in microscopic blood slides. This article gives an overview of these techniques and discusses the current developments in image analysis and machine learning for microscopic malaria diagnosis. We organize the different approaches published in the literature according to the techniques used for imaging, image preprocessing, parasite detection and cell segmentation, feature computation, and automatic cell classification. Readers will find the different techniques listed in tables, with the relevant articles cited next to them, for both thin and thick blood smear images. We also discussed the latest developments in sections devoted to deep learning and smartphone technology for future malaria diagnosis. Published by Elsevier Inc.

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Year:  2018        PMID: 29360430      PMCID: PMC5840030          DOI: 10.1016/j.trsl.2017.12.004

Source DB:  PubMed          Journal:  Transl Res        ISSN: 1878-1810            Impact factor:   7.012


  62 in total

1.  Evaluation of the Parasight Platform for Malaria Diagnosis.

Authors:  Yochay Eshel; Arnon Houri-Yafin; Hagai Benkuzari; Natalie Lezmy; Mamta Soni; Malini Charles; Jayanthi Swaminathan; Hilda Solomon; Pavithra Sampathkumar; Zul Premji; Caroline Mbithi; Zaitun Nneka; Simon Onsongo; Daniel Maina; Sarah Levy-Schreier; Caitlin Lee Cohen; Dan Gluck; Joseph Joel Pollak; Seth J Salpeter
Journal:  J Clin Microbiol       Date:  2016-12-14       Impact factor: 5.948

2.  Convolutional neural network-based malaria diagnosis from focus stack of blood smear images acquired using custom-built slide scanner.

Authors:  Gopalakrishna Pillai Gopakumar; Murali Swetha; Gorthi Sai Siva; Gorthi R K Sai Subrahmanyam
Journal:  J Biophotonics       Date:  2017-11-15       Impact factor: 3.207

3.  Ontology-based malaria parasite stage and species identification from peripheral blood smear images.

Authors:  Vishnu V Makkapati; Raghuveer M Rao
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2011

4.  Detection of malaria parasites in thick blood films.

Authors:  Matthias Elter; Erik Hasslmeyer; Thorsten Zerfass
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2011

Review 5.  Computer vision for microscopy diagnosis of malaria.

Authors:  F Boray Tek; Andrew G Dempster; Izzet Kale
Journal:  Malar J       Date:  2009-07-13       Impact factor: 2.979

Review 6.  Malaria diagnosis: a brief review.

Authors:  Noppadon Tangpukdee; Chatnapa Duangdee; Polrat Wilairatana; Srivicha Krudsood
Journal:  Korean J Parasitol       Date:  2009-05-26       Impact factor: 1.341

7.  Performance of a malaria microscopy image analysis slide reading device.

Authors:  William R Prescott; Robert G Jordan; Martin P Grobusch; Vernon M Chinchilli; Immo Kleinschmidt; Joseph Borovsky; Mark Plaskow; Miguel Torrez; Maximo Mico; Christopher Schwabe
Journal:  Malar J       Date:  2012-05-06       Impact factor: 2.979

8.  Field evaluation of an automated RDT reader and data management device for Plasmodium falciparum/Plasmodium vivax malaria in endemic areas of Colombia.

Authors:  Sócrates Herrera; Andrés F Vallejo; Juan P Quintero; Myriam Arévalo-Herrera; Marcela Cancino; Santiago Ferro
Journal:  Malar J       Date:  2014-03-10       Impact factor: 2.979

9.  Automated Detection of P. falciparum Using Machine Learning Algorithms with Quantitative Phase Images of Unstained Cells.

Authors:  Han Sang Park; Matthew T Rinehart; Katelyn A Walzer; Jen-Tsan Ashley Chi; Adam Wax
Journal:  PLoS One       Date:  2016-09-16       Impact factor: 3.240

10.  Quantitative imaging with a mobile phone microscope.

Authors:  Arunan Skandarajah; Clay D Reber; Neil A Switz; Daniel A Fletcher
Journal:  PLoS One       Date:  2014-05-13       Impact factor: 3.240

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  49 in total

1.  Comparing Artificial Intelligence Platforms for Histopathologic Cancer Diagnosis.

Authors:  Andrew A Borkowski; Catherine P Wilson; Steven A Borkowski; L Brannon Thomas; Lauren A Deland; Stefanie J Grewe; Stephen M Mastorides
Journal:  Fed Pract       Date:  2019-10

2.  Automated screening of sickle cells using a smartphone-based microscope and deep learning.

Authors:  Kevin de Haan; Hatice Ceylan Koydemir; Yair Rivenson; Derek Tseng; Elizabeth Van Dyne; Lissette Bakic; Doruk Karinca; Kyle Liang; Megha Ilango; Esin Gumustekin; Aydogan Ozcan
Journal:  NPJ Digit Med       Date:  2020-05-22

3.  Understanding the learned behavior of customized convolutional neural networks toward malaria parasite detection in thin blood smear images.

Authors:  Sivaramakrishnan Rajaraman; Kamolrat Silamut; Md A Hossain; I Ersoy; Richard J Maude; Stefan Jaeger; George R Thoma; Sameer K Antani
Journal:  J Med Imaging (Bellingham)       Date:  2018-07-18

4.  Scientific Discovery Games for Biomedical Research.

Authors:  Rhiju Das; Benjamin Keep; Peter Washington; Ingmar H Riedel-Kruse
Journal:  Annu Rev Biomed Data Sci       Date:  2019-07

5.  Computer Vision and Artificial Intelligence Are Emerging Diagnostic Tools for the Clinical Microbiologist.

Authors:  Daniel D Rhoads
Journal:  J Clin Microbiol       Date:  2020-05-26       Impact factor: 5.948

6.  Learned sensing: jointly optimized microscope hardware for accurate image classification.

Authors:  Alex Muthumbi; Amey Chaware; Kanghyun Kim; Kevin C Zhou; Pavan Chandra Konda; Richard Chen; Benjamin Judkewitz; Andreas Erdmann; Barbara Kappes; Roarke Horstmeyer
Journal:  Biomed Opt Express       Date:  2019-11-19       Impact factor: 3.732

7.  Morphology-based classification of mycobacteria-infected macrophages with convolutional neural network: reveal EsxA-induced morphologic changes indistinguishable by naked eyes.

Authors:  Yanqing Bao; Xinzhuo Zhao; Lin Wang; Wei Qian; Jianjun Sun
Journal:  Transl Res       Date:  2019-06-28       Impact factor: 7.012

8.  Automatic detection of Plasmodium parasites from microscopic blood images.

Authors:  Tehreem Fatima; Muhammad Shahid Farid
Journal:  J Parasit Dis       Date:  2019-09-20

9.  Clustering-Based Dual Deep Learning Architecture for Detecting Red Blood Cells in Malaria Diagnostic Smears.

Authors:  Yasmin M Kassim; Kannappan Palaniappan; Feng Yang; Mahdieh Poostchi; Nila Palaniappan; Richard J Maude; Sameer Antani; Stefan Jaeger
Journal:  IEEE J Biomed Health Inform       Date:  2021-05-11       Impact factor: 5.772

Review 10.  Image analysis and artificial intelligence in infectious disease diagnostics.

Authors:  K P Smith; J E Kirby
Journal:  Clin Microbiol Infect       Date:  2020-03-22       Impact factor: 8.067

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