| Literature DB >> 29352517 |
Xiaojing Wang1, Wei Li1, Liangkun Ma2, Fan Ping1, Juntao Liu2, Xueyan Wu1, Jiangfeng Mao1, Xi Wang1, Min Nie1.
Abstract
AIMS/Entities:
Keywords: Gestational diabetes mellitus; Type 2 diabetes; Variants
Mesh:
Substances:
Year: 2018 PMID: 29352517 PMCID: PMC6123053 DOI: 10.1111/jdi.12803
Source DB: PubMed Journal: J Diabetes Investig ISSN: 2040-1116 Impact factor: 4.232
Figure 1Flow diagram of single‐nucleotide polymorphism (SNP) selection. 3′UTR, 3′ untranslated region; CHB, Chinese Han in Beijing; GWAS, genome‐wide association study; MAF, minor allele frequency; miRNA, micro‐ribonucleic acid; NCBI dbSNP, National Center for Biotechnology Information SNP database; T2DM, type 2 diabetes mellitus.
Six micro‐ribonucleic acid‐binding single‐nucleotide polymorphisms and the Hardy–Weinberg equilibrium test
| SNP | Gene | Main function | Min/Maj | Chr. position | MAF (CHB) | Sample MAF | Predicted binding miRNA | Algorithm |
|
|---|---|---|---|---|---|---|---|---|---|
| rs712699 |
| Pancreatic development | A/G | Chr.7:127250597 | 0.356 | 0.403 | hsa‐miR‐223 | TargetScan;MiRDB | 0.122 |
| rs1051295 |
| Insulin secretion | C/T | Chr.20:47988905 | 0.444 | 0.413 | hsa‐miR‐216a | PolymiRTS;TargetScan | 0.485 |
| rs1042842 |
| Mitochondrial fusion | A/G | Chr.1: 12071680 | 0.376 | 0.397 | hsa‐miR‐183 | PolymiRTS;TargetScan | 0.116 |
| rs1050800 |
| Adipocyte differentiation | T/C | Chr.2: 11965814 | 0.211 | 0.256 | hsa‐miR‐96 | PolymiRTS;TargetScan | 0.727 |
| rs1802295 |
| Transport proteins | T/C | Chr.10:70931474 | 0.108 | 0.116 | hsa‐miR‐510 | PolymiRTS;TargetScan;MiRDB | 0.861 |
| rs10802502 |
| Regulate inflammation | C/T | Chr.1: 247612295 | 0.423 | 0.484 | hsa‐miR‐548 | PolymiRTS;TargetScan;microRNA.org | 0.074 |
†From 1,000‐genome database. CHB, Chinese Han in Beijing; Chr., chromosome; MAF, frequency of minor allele; Maj, major allele; Min, minor allele; miRNA, micro‐ribonucleic acid.
Genotype distribution and gestational diabetes mellitus susceptibility in additive model
| SNP ID | Gene | Model | Genotypes/minor allele | GDM | Controls | OR (95% CI) |
| ||
|---|---|---|---|---|---|---|---|---|---|
| rs712699 |
| Additive | A/A vs G/G | 154 | 293 | 126 | 317 | 1.366 (1.021–1.828) | 0.036 |
| rs1051295 |
| Additive | C/C vs T/T | 149 | 247 | 125 | 316 | 1.579 (1.172–2.128) | 0.003 |
| rs1042842 |
| Additive | A/A vs G/G | 153 | 278 | 135 | 358 | 1.398 (1.050–1.862) | 0.022 |
| rs1050800 |
| Additive | T/T vs C/C | 46 | 461 | 51 | 513 | 1.027 (0.665–1.587) | 0.903 |
| rs1802295 |
| Additive | T/T vs C/C | 12 | 642 | 12 | 699 | 0.932 (0.411–2.113) | 0.866 |
| rs10802502 |
| Additive | C/C vs T/T | 195 | 228 | 201 | 221 | 0.945 (0.716–1.247) | 0.691 |
*Significant P‐values (P < 0.05). CI, confidence interval; GDM, gestational diabetes mellitus; OR, odds ratio; SNP, single‐nucleotide polyporphism.
Association between minor allele and glucose metabolism‐related quantitative traits
| SNP ID | Gene | Minor allele | Fasting plasma glucose ( | 3‐h OGTT glucose ( | HOMA‐β ( | HOMA‐IR ( | ||||
|---|---|---|---|---|---|---|---|---|---|---|
|
|
|
|
|
|
|
|
| |||
| rs712699 |
| A | 0.016 (−0.023, 0.046) | 0.504 | 0.013 (−0.079, 0.136) | 0.601 | −0.036 (−0.075, 0.015) | 0.186 | −0.019 (−0.068, 0.032) | 0.484 |
| rs1051295 |
| C | 0.006 (0.013, 0.083) | 0.008 | 0.058 (0.016, 0.234) | 0.025 | 0.045 (−0.007, 0.085) | 0.099 | 0.065 (0.011, 0.114) | 0.017 |
| rs1042842 |
| A | 0.029 (−0.013, 0.054) | 0.236 | 0.056 (0.013, 0.222) | 0.028 | −0.003 (−0.047, 0.042) | 0.902 | 0.011 (−0.039, 0.060) | 0.688 |
| rs1050800 |
| T | 0.024 (−0.019, 0.060) | 0.318 | 0.061 (0.029, 0.274) | 0.016 | −0.059 (−0.109, −0.006) | 0.029 | −0.027 (−0.087, 0.028) | 0.310 |
| rs1802295 |
| T | 0.050 (−0,108, −0.002) | 0.040 | 0.019 (−0.100, 0.224) | 0.453 | 0.008 (−0.058, 0.080) | 0.759 | −0.056 (−0.155, −0.003) | 0.042 |
| rs10802502 |
| C | 0.020 (−0.020, 0.048) | 0.414 | −0.011 (−0.129, 0.083) | 0.673 | −0.027 (−0.068, 0.022) | 0.315 | −0.019 (−0.068, 0.031) | 0.468 |
P‐value was adjusted for age in the linear regression model. *Significant P‐values (P < 0.05). CI, confidence interval; HOMA‐β, homeostatic model assessments of islet β‐cell function; HOMA‐IR, homeostatic model assessments of insulin resistance; OGTT, oral glucose tolerance test; OR, odds ratio; SNP, single‐nucleotide polymorphism.