Literature DB >> 29351860

Microtubule dynamics: moving toward a multi-scale approach.

Mahya Hemmat1, Brian T Castle2, David J Odde3.   

Abstract

Microtubule self-assembly dynamics serve to facilitate many vital cellular functions, such as chromosome segregation during mitosis and synaptic plasticity. However, the detailed atomistic basis of assembly dynamics has remained an unresolved puzzle. A key challenge is connecting together the vast range of relevant length-time scales, events happening at time scales ranging from nanoseconds, such as tubulin molecular interactions (Å-nm), to minutes-hours, such as the cellular response to microtubule dynamics during mitotic progression (μm). At the same time, microtubule interactions with associated proteins and binding agents, such as anti-cancer drugs, can strongly affect this dynamic process through atomic-level mechanisms that remain to be elucidated. New high-resolution technologies for investigating these interactions, including cryo-electron microscopy (EM) techniques and total internal reflection fluorescence (TIRF) microscopy, are yielding important new insights. Here, we focus on recent studies of microtubule dynamics, both theoretical and experimental, and how these findings shed new light on this complex phenomenon across length-time scales, from Å to μm and from nanoseconds to minutes.
Copyright © 2018 Elsevier Ltd. All rights reserved.

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Year:  2018        PMID: 29351860      PMCID: PMC5911414          DOI: 10.1016/j.ceb.2017.12.013

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  48 in total

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Journal:  Cell       Date:  2000-09-15       Impact factor: 41.582

Review 2.  Molecular dynamics simulations of biomolecules.

Authors:  Martin Karplus; J Andrew McCammon
Journal:  Nat Struct Biol       Date:  2002-09

Review 3.  A review of protein-small molecule docking methods.

Authors:  R D Taylor; P J Jewsbury; J W Essex
Journal:  J Comput Aided Mol Des       Date:  2002-03       Impact factor: 3.686

4.  Free Energy Calculations by the Molecular Mechanics Poisson-Boltzmann Surface Area Method.

Authors:  Nadine Homeyer; Holger Gohlke
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5.  Termination of Protofilament Elongation by Eribulin Induces Lattice Defects that Promote Microtubule Catastrophes.

Authors:  Harinath Doodhi; Andrea E Prota; Ruddi Rodríguez-García; Hui Xiao; Daniel W Custar; Katja Bargsten; Eugene A Katrukha; Manuel Hilbert; Shasha Hua; Kai Jiang; Ilya Grigoriev; Chia-Ping H Yang; David Cox; Susan Band Horwitz; Lukas C Kapitein; Anna Akhmanova; Michel O Steinmetz
Journal:  Curr Biol       Date:  2016-06-16       Impact factor: 10.834

6.  GTP hydrolysis during microtubule assembly.

Authors:  E T O'Brien; W A Voter; H P Erickson
Journal:  Biochemistry       Date:  1987-06-30       Impact factor: 3.162

7.  Phosphorylation of β-Tubulin by the Down Syndrome Kinase, Minibrain/DYRK1a, Regulates Microtubule Dynamics and Dendrite Morphogenesis.

Authors:  Kassandra M Ori-McKenney; Richard J McKenney; Hector H Huang; Tun Li; Shan Meltzer; Lily Yeh Jan; Ronald D Vale; Arun P Wiita; Yuh Nung Jan
Journal:  Neuron       Date:  2016-04-21       Impact factor: 17.173

8.  Mutations in Human Tubulin Proximal to the Kinesin-Binding Site Alter Dynamic Instability at Microtubule Plus- and Minus-Ends.

Authors:  Shih-Chieh Ti; Melissa C Pamula; Stuart C Howes; Christian Duellberg; Nicholas I Cade; Ralph E Kleiner; Scott Forth; Thomas Surrey; Eva Nogales; Tarun M Kapoor
Journal:  Dev Cell       Date:  2016-04-04       Impact factor: 12.270

9.  Microtubule dynamic instability: a new model with coupled GTP hydrolysis and multistep catastrophe.

Authors:  Hugo Bowne-Anderson; Marija Zanic; Monika Kauer; Jonathon Howard
Journal:  Bioessays       Date:  2013-03-27       Impact factor: 4.345

10.  GDP-to-GTP exchange on the microtubule end can contribute to the frequency of catastrophe.

Authors:  Felipe-Andrés Piedra; Tae Kim; Emily S Garza; Elisabeth A Geyer; Alexander Burns; Xuecheng Ye; Luke M Rice
Journal:  Mol Biol Cell       Date:  2016-05-04       Impact factor: 4.138

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  5 in total

1.  Quantitative mass imaging of single biological macromolecules.

Authors:  Gavin Young; Nikolas Hundt; Daniel Cole; Adam Fineberg; Joanna Andrecka; Andrew Tyler; Anna Olerinyova; Ayla Ansari; Erik G Marklund; Miranda P Collier; Shane A Chandler; Olga Tkachenko; Joel Allen; Max Crispin; Neil Billington; Yasuharu Takagi; James R Sellers; Cédric Eichmann; Philipp Selenko; Lukas Frey; Roland Riek; Martin R Galpin; Weston B Struwe; Justin L P Benesch; Philipp Kukura
Journal:  Science       Date:  2018-04-27       Impact factor: 47.728

2.  MTrack: Automated Detection, Tracking, and Analysis of Dynamic Microtubules.

Authors:  Varun Kapoor; William G Hirst; Christoph Hentschel; Stephan Preibisch; Simone Reber
Journal:  Sci Rep       Date:  2019-03-07       Impact factor: 4.379

3.  Bioinformatics analysis of the biological changes involved in the osteogenic differentiation of human mesenchymal stem cells.

Authors:  Tingyu Fan; Rongmei Qu; Qinghe Yu; Bing Sun; Xin Jiang; Yuchao Yang; Xiaolan Huang; Zhitao Zhou; Jun Ouyang; Shizhen Zhong; Jingxing Dai
Journal:  J Cell Mol Med       Date:  2020-05-28       Impact factor: 5.310

4.  Mechanics and kinetics of dynamic instability.

Authors:  Thomas Ct Michaels; Shuo Feng; Haiyi Liang; L Mahadevan
Journal:  Elife       Date:  2020-05-11       Impact factor: 8.140

5.  Atomistic Basis of Microtubule Dynamic Instability Assessed Via Multiscale Modeling.

Authors:  Mahya Hemmat; David J Odde
Journal:  Ann Biomed Eng       Date:  2021-02-03       Impact factor: 3.934

  5 in total

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