Literature DB >> 29351846

Dual Strategies for Argonaute2-Mediated Biogenesis of Erythroid miRNAs Underlie Conserved Requirements for Slicing in Mammals.

David Jee1, Jr-Shiuan Yang1, Sun-Mi Park2, D'Juan T Farmer3, Jiayu Wen4, Timothy Chou2, Arthur Chow2, Michael T McManus3, Michael G Kharas2, Eric C Lai5.   

Abstract

While Slicer activity of Argonaute is central to RNAi, conserved roles of slicing in endogenous regulatory biology are less clear, especially in mammals. Biogenesis of erythroid Dicer-independent mir-451 involves Ago2 catalysis, but mir-451-KO mice do not phenocopy Ago2 catalytic-dead (Ago2-CD) mice, suggesting other needs for slicing. Here, we reveal mir-486 as another dominant erythroid miRNA with atypical biogenesis. While it is Dicer dependent, it requires slicing to eliminate its star strand. Thus, in Ago2-CD conditions, miR-486-5p is functionally inactive due to duplex arrest. Genome-wide analyses reveal miR-486 and miR-451 as the major slicing-dependent miRNAs in the hematopoietic system. Moreover, mir-486-KO mice exhibit erythroid defects, and double knockout of mir-486/451 phenocopies the cell-autonomous effects of Ago2-CD in the hematopoietic system. Finally, we observe that Ago2 is the dominant-expressed Argonaute in maturing erythroblasts, reflecting a specialized environment for processing slicing-dependent miRNAs. Overall, the mammalian hematopoietic system has evolved multiple conserved requirements for Slicer-dependent miRNA biogenesis.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Ago2; Argonaute; RNAi; Slicer; erythropoiesis; hematopoietic; miR-451; miR-486; miRNA; microRNA

Mesh:

Substances:

Year:  2018        PMID: 29351846      PMCID: PMC5824974          DOI: 10.1016/j.molcel.2017.12.027

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  63 in total

1.  Argonaute2 is the catalytic engine of mammalian RNAi.

Authors:  Jidong Liu; Michelle A Carmell; Fabiola V Rivas; Carolyn G Marsden; J Michael Thomson; Ji-Joon Song; Scott M Hammond; Leemor Joshua-Tor; Gregory J Hannon
Journal:  Science       Date:  2004-07-29       Impact factor: 47.728

2.  MicroRNA-directed cleavage of HOXB8 mRNA.

Authors:  Soraya Yekta; I-Hung Shih; David P Bartel
Journal:  Science       Date:  2004-04-23       Impact factor: 47.728

3.  miR-191 regulates mouse erythroblast enucleation by down-regulating Riok3 and Mxi1.

Authors:  Lingbo Zhang; Johan Flygare; Piu Wong; Bing Lim; Harvey F Lodish
Journal:  Genes Dev       Date:  2010-12-31       Impact factor: 11.361

4.  A retrotransposon-driven dicer isoform directs endogenous small interfering RNA production in mouse oocytes.

Authors:  Matyas Flemr; Radek Malik; Vedran Franke; Jana Nejepinska; Radislav Sedlacek; Kristian Vlahovicek; Petr Svoboda
Journal:  Cell       Date:  2013-11-07       Impact factor: 41.582

5.  Diverse endonucleolytic cleavage sites in the mammalian transcriptome depend upon microRNAs, Drosha, and additional nucleases.

Authors:  Fedor V Karginov; Sihem Cheloufi; Mark M W Chong; Alexander Stark; Andrew D Smith; Gregory J Hannon
Journal:  Mol Cell       Date:  2010-06-25       Impact factor: 17.970

6.  MicroRNA activity is suppressed in mouse oocytes.

Authors:  Jun Ma; Matyas Flemr; Paula Stein; Philipp Berninger; Radek Malik; Mihaela Zavolan; Petr Svoboda; Richard M Schultz
Journal:  Curr Biol       Date:  2010-01-28       Impact factor: 10.834

7.  Functional parameters of Dicer-independent microRNA biogenesis.

Authors:  Jr-Shiuan Yang; Thomas Maurin; Eric C Lai
Journal:  RNA       Date:  2012-03-29       Impact factor: 4.942

8.  Dicer-independent, Ago2-mediated microRNA biogenesis in vertebrates.

Authors:  Jr-Shiuan Yang; Eric C Lai
Journal:  Cell Cycle       Date:  2010-11-15       Impact factor: 4.534

9.  MicroRNA-486 regulates normal erythropoiesis and enhances growth and modulates drug response in CML progenitors.

Authors:  Li-Sheng Wang; Ling Li; Liang Li; Su Chu; Keh-Dong Shiang; Min Li; Hui-Yan Sun; Jun Xu; Feng-Jun Xiao; Guihua Sun; John J Rossi; YinWei Ho; Ravi Bhatia
Journal:  Blood       Date:  2014-12-16       Impact factor: 22.113

10.  Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs.

Authors:  Gunter Meister; Markus Landthaler; Agnieszka Patkaniowska; Yair Dorsett; Grace Teng; Thomas Tuschl
Journal:  Mol Cell       Date:  2004-07-23       Impact factor: 17.970

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  21 in total

Review 1.  Mechanistic Insights into MicroRNA-Mediated Gene Silencing.

Authors:  Thomas F Duchaine; Marc R Fabian
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-03-01       Impact factor: 10.005

Review 2.  miRNA-486-5p: signaling targets and role in non-malignant disease.

Authors:  Adrianna Douvris; Jose Viñas; Kevin D Burns
Journal:  Cell Mol Life Sci       Date:  2022-06-22       Impact factor: 9.207

3.  Ago2-Dependent Processing Allows miR-451 to Evade the Global MicroRNA Turnover Elicited during Erythropoiesis.

Authors:  Dmitry A Kretov; Isha A Walawalkar; Alexandra Mora-Martin; Andrew M Shafik; Simon Moxon; Daniel Cifuentes
Journal:  Mol Cell       Date:  2020-03-18       Impact factor: 17.970

4.  Genomic Clustering Facilitates Nuclear Processing of Suboptimal Pri-miRNA Loci.

Authors:  Renfu Shang; S Chan Baek; Kijun Kim; Boseon Kim; V Narry Kim; Eric C Lai
Journal:  Mol Cell       Date:  2020-04-16       Impact factor: 17.970

5.  Identification of miR-18a-5p as an oncogene and prognostic biomarker in RCC.

Authors:  Liang Zhou; Zuwei Li; Xiang Pan; Yulin Lai; Jing Quan; Liwen Zhao; Jinling Xu; Weijie Xu; Xin Guan; Hang Li; Shangqi Yang; Yaoting Gui; Yongqing Lai
Journal:  Am J Transl Res       Date:  2018-06-15       Impact factor: 4.060

Review 6.  Regulation of microRNA biogenesis and its crosstalk with other cellular pathways.

Authors:  Thomas Treiber; Nora Treiber; Gunter Meister
Journal:  Nat Rev Mol Cell Biol       Date:  2019-01       Impact factor: 94.444

7.  miR-486 is essential for muscle function and suppresses a dystrophic transcriptome.

Authors:  Adrienne Samani; Rylie M Hightower; Andrea L Reid; Katherine G English; Michael A Lopez; J Scott Doyle; Michael J Conklin; David A Schneider; Marcas M Bamman; Jeffrey J Widrick; David K Crossman; Min Xie; David Jee; Eric C Lai; Matthew S Alexander
Journal:  Life Sci Alliance       Date:  2022-05-05

Review 8.  AGO unchained: Canonical and non-canonical roles of Argonaute proteins in mammals.

Authors:  Laura Sala; Srividya Chandrasekhar; Joana A Vidigal
Journal:  Front Biosci (Landmark Ed)       Date:  2020-01-01

Review 9.  RNA Binding Proteins and Regulation of mRNA Translation in Erythropoiesis.

Authors:  Kat S Moore; Marieke von Lindern
Journal:  Front Physiol       Date:  2018-07-24       Impact factor: 4.566

10.  Mechanism and Function of Antiviral RNA Interference in Mice.

Authors:  Qingxia Han; Gang Chen; Jinyan Wang; David Jee; Wan-Xiang Li; Eric C Lai; Shou-Wei Ding
Journal:  mBio       Date:  2020-08-04       Impact factor: 7.867

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