| Literature DB >> 29350150 |
Ruklanthi de Alwis, Conall Watson, Birgit Nikolay, John H Lowry, Nga Tran Vu Thieu, Tan Trinh Van, Dung Tran Thi Ngoc, Kitione Rawalai, Mere Taufa, Jerimaia Coriakula, Colleen L Lau, Eric J Nilles, W John Edmunds, Mike Kama, Stephen Baker, Jorge Cano.
Abstract
Fiji recently experienced a sharp increase in reported typhoid fever cases. To investigate geographic distribution and environmental risk factors associated with Salmonella enterica serovar Typhi infection, we conducted a cross-sectional cluster survey with associated serologic testing for Vi capsular antigen-specific antibodies (a marker for exposure to Salmonella Typhi in Fiji in 2013. Hotspots with high seroprevalence of Vi-specific antibodies were identified in northeastern mainland Fiji. Risk for Vi seropositivity increased with increased annual rainfall (odds ratio [OR] 1.26/quintile increase, 95% CI 1.12-1.42), and decreased with increased distance from major rivers and creeks (OR 0.89/km increase, 95% CI 0.80-0.99) and distance to modeled flood-risk areas (OR 0.80/quintile increase, 95% CI 0.69-0.92) after being adjusted for age, typhoid fever vaccination, and home toilet type. Risk for exposure to Salmonella Typhi and its spatial distribution in Fiji are driven by environmental factors. Our findings can directly affect typhoid fever control efforts in Fiji.Entities:
Keywords: Fiji; Salmonella enterica serovar Typhi; Vi antibodies; Vi capsular antigen; bacteria; environmental factors; flooding; multilevel analysis; risk factors; seroprevalence; typhoid fever
Mesh:
Substances:
Year: 2018 PMID: 29350150 PMCID: PMC5782885 DOI: 10.3201/eid2402.170704
Source DB: PubMed Journal: Emerg Infect Dis ISSN: 1080-6040 Impact factor: 6.883
Figure 1Geographic distribution of antibodies against Vi capsular antigen of Salmonella enterica serovar Typhi, Fiji, 2013. A) Location of Fiji islands in the southern Pacific Ocean. B) Seroprevalence of Vi antibody in sampled communities in 2013. C) Details of typhoid seroprevalence in large cities in Fiji (Labasa, Suva, Nadi, and Ba). D) Typhoid seroprevalence estimated for subdivisions in Fiji.
Association between environmental factors and typhoid fever seropositivity by univariable multilevel mixed-effects logistic analysis, Fiji*
| Environmental variable | No. | Variable type | Odds ratio (95% CI) | p value |
|---|---|---|---|---|
| Survey data | ||||
| Is there a stream nearby? | 1,508 | Binary | 1.09 (0.82–1.46) | 0.528 |
| No (0) | 616 | |||
| Yes (1) | 892 | |||
| No. times house has flooded in past 3 y | 1,483 | Categorical | ||
| 0 | 1,380 | 1.00 (referent) | NA | |
| 1–2 | 97 | 0.87 (0.52–1.47) | 0.604 | |
| 3–5 | 6 | 0.89 (0.15–5.13) | 0.897 | |
| No. times land has flooded in past 3 y | 1,496 | Categorical | ||
| 0 | 1,264 | 1.00 (referent) | NA | |
| 1–2 | 174 | 1.13 (0.77–1.66) | 0.534 | |
| 3–5 | 58 | 1.21 (0.66–2.22) | 0.542 | |
| Work location† | 1,359 | Categorical | ||
| Indoors | 636 | 1.00 (referent) | NA | |
| Outdoors | 267 | 1.59 (1.15–2.19) | 0.005‡ | |
| Both | 456 | 1.22 (0.93–1.60) | 0.160 | |
| Urbanization† | 1,510 | Categorical | ||
| Urban | 500 | 1.00 (referent) | NA | |
| Periurban | 247 | 0.61 (0.37–1.01) | 0.054 | |
| Rural | 763 |
| 1.27 (0.89–1.81) | 0.185 |
| Geospatial data | ||||
| Elevation, by quintiles | 1,462 | Ordered, categorical | 1.02 (0.90–1.15) | 0.793 |
| Slope, by quintiles | 1,462 | Ordered, categorical | 1.04 (0.93–1.15) | 0.519 |
| Temperature, by quintiles | 1,462 | Ordered, categorical | 0.95 (0.84–1.07) | 0.398 |
| Annual rainfall, by quintiles† | 1,462 | Ordered, categorical | 1.13 (1.01–1.28) | 0.039‡ |
| Rainfall in wettest month, by quintiles | 1,462 | Ordered, categorical | 1.15 (1.02–1.30) | 0.020‡ |
| Rainfall during cyclone season, by quintiles | 1,462 | Ordered, categorical | 1.14 (1.01–1.29) | 0.029‡ |
| Distance to major rivers, by quintiles | 1,462 | Ordered, categorical | 1.07 (0.95–1.20) | 0.255 |
| Distance to major rivers and major creeks, km† | 1,462 | Continuous | 0.99 (0.99–1.00) | 0.081 |
| Distance to major rivers and major and minor creeks, by quintiles | 1,462 | Ordered, categorical | 0.96 (0.86–1.07) | 0.439 |
| Distance to poorly drained soils (major and secondary flood plains), by quintiles | 1,462 | Ordered, categorical | 0.92 (0.80–1.06) | 0.275 |
| Distance to poorly drained soils (major flood plains only), by quintiles | 1,462 | Ordered, categorical | 1.00 (0.87–1.17) | 0.949 |
| Distance from modeled flood-risk area, by quintiles† | 1,462 | Ordered, categorical | 0.90 (0.78–1.03) | 0.134 |
*NA, not applicable. †Variables included in the multivariable multilevel analysis. ‡Variables strongly associated with typhoid fever seroimmune status by univariable analysis (p<0.05).
Figure 2Local clustering of seroprevalence of typhoid fever in divisions in Fiji. Local Anselin Moran I analysis conducted for each division separately by using an inverse-distance weighting for the communities within 3 divisions. A) Northern, B) Western, and C) Central. High-high clusters (hotspots) are communities with high seroprevalence of antibodies against Salmonella enterica serovar Typhi Vi capsular antigen that are near other communities with high seroprevalence. Low-low clusters (coldspots) are communities with low seroprevalence of antibodies against Salmonella Typhi Vi antigen that are near other communities with low seroprevalence. Red ovals indicate locations of the typhoid outbreak in 2016 after Cyclone Winston and hotspots detected by local clustering.
Association between social and environmental factors and typhoid fever seroimmune status in multivariable multilevel model, Fiji*
| Variable | Odds ratio (95% CI) | p value |
|---|---|---|
| Annual rainfall, by quintiles | 1.26 (1.12–1.42) | <0.001 |
| Distance to major rivers and major creeks, km | 0.89 (0.80–0.99) | 0.031 |
| Distance to modeled flood-risk areas, by quintiles | 0.80 (0.69–0.92) | 0.002 |
| Age of participant, y | 1.03 (1.02–1.03) | <0.001 |
| Vaccination status | 1.62 (1.02–2.57) | 0.041 |
| Type of toilet at home | NA | NA |
| Flush | 1.0 (referent) | NA |
| Water seal/pour flush | 1.66 (1.16–2.38) | 0.006 |
| Pit (with or without slab) and bucket | 1.51 (0.91–2.52) | 0.110 |
*Multivariable model was run by using 1,338 observations in 61 communities. NA, not applicable.
Relative contributions of predictor variables from an ensemble of 50 boosted regression tree models for typhoid fever seropositivity developed with cross-validation on data from 1,305 samples and 11 variables, Fiji
| Variable | Data type | Relative contribution, % (95% CI) |
|---|---|---|
| Age, y | Continuous | 33.0 (31.1–34.8) |
| Longitude, °E | Continuous | 15.5 (14.7–16.0) |
| Distance from major rivers and creeks, m | Continuous | 14.5 (13.6–15.3) |
| Annual rainfall, mm | Continuous | 9.3 (8.5–10.0) |
| Distance from flood-risk areas, m | Continuous | 7.7 (6.8–8.4) |
| Latitude, °S | Continuous | 6.9 (5.6–7.9) |
| Education | Categorical | 4.2 (3.8–4.6) |
| Urbanization | Categorical | 3.3 (2.9–3.8) |
| Typhoid fever vaccination | Binary | 2.3 (2.1–2.5) |
| Sewage disposal | Categorical | 1.8 (1.5–2.2) |
| Toilet type at home | Categorical | 0.8 (0.6–1.2) |
Figure 3Partial dependence plots for the 4 most influential variables in boosted regression tree (BRT) model for antibodies against Vi capsular antigen of Salmonella enterica serovar Typhi, Fiji, 2013. A) Age; B) distance to major rivers and creeks; C) annual rainfall; and D) distance to flood-risk areas. The final ensemble BRT was constructed with 50 BRT models and 11 environmental and social covariates by using data from 1,305 samples. Gray areas indicate 95% CIs of plots.