Literature DB >> 29348236

A global atlas of the dominant bacteria found in soil.

Manuel Delgado-Baquerizo1,2, Angela M Oliverio3,4, Tess E Brewer3,5, Alberto Benavent-González6, David J Eldridge7, Richard D Bardgett8, Fernando T Maestre2, Brajesh K Singh9,10, Noah Fierer1,4.   

Abstract

The immense diversity of soil bacterial communities has stymied efforts to characterize individual taxa and document their global distributions. We analyzed soils from 237 locations across six continents and found that only 2% of bacterial phylotypes (~500 phylotypes) consistently accounted for almost half of the soil bacterial communities worldwide. Despite the overwhelming diversity of bacterial communities, relatively few bacterial taxa are abundant in soils globally. We clustered these dominant taxa into ecological groups to build the first global atlas of soil bacterial taxa. Our study narrows down the immense number of bacterial taxa to a "most wanted" list that will be fruitful targets for genomic and cultivation-based efforts aimed at improving our understanding of soil microbes and their contributions to ecosystem functioning.
Copyright © 2018 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

Mesh:

Year:  2018        PMID: 29348236     DOI: 10.1126/science.aap9516

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  249 in total

1.  Testing soil nematode extraction efficiency using different variations of the Baermann-funnel method.

Authors:  Simone Cesarz; Annika Eva Schulz; Rémy Beugnon; Nico Eisenhauer
Journal:  Soil Org       Date:  2019-08-06

2.  Sedimentary Marl mudstone as a substrate in a xeric environment revealed by microbiome analysis.

Authors:  Oksana Koryachenko; Ruben Girsowicz; Yaron Dekel; Tirza Doniger; Yosef Steinberger
Journal:  Extremophiles       Date:  2019-03-08       Impact factor: 2.395

3.  Local biotic interactions drive species-specific divergence in soil bacterial communities.

Authors:  Xin-Feng Zhao; Yi-Qi Hao; Da-Yong Zhang; Quan-Guo Zhang
Journal:  ISME J       Date:  2019-07-29       Impact factor: 10.302

4.  Soil nematode abundance and functional group composition at a global scale.

Authors:  Johan van den Hoogen; Stefan Geisen; Devin Routh; Howard Ferris; Walter Traunspurger; David A Wardle; Ron G M de Goede; Byron J Adams; Wasim Ahmad; Walter S Andriuzzi; Richard D Bardgett; Michael Bonkowski; Raquel Campos-Herrera; Juvenil E Cares; Tancredi Caruso; Larissa de Brito Caixeta; Xiaoyun Chen; Sofia R Costa; Rachel Creamer; José Mauro da Cunha Castro; Marie Dam; Djibril Djigal; Miguel Escuer; Bryan S Griffiths; Carmen Gutiérrez; Karin Hohberg; Daria Kalinkina; Paul Kardol; Alan Kergunteuil; Gerard Korthals; Valentyna Krashevska; Alexey A Kudrin; Qi Li; Wenju Liang; Matthew Magilton; Mariette Marais; José Antonio Rodríguez Martín; Elizaveta Matveeva; El Hassan Mayad; Christian Mulder; Peter Mullin; Roy Neilson; T A Duong Nguyen; Uffe N Nielsen; Hiroaki Okada; Juan Emilio Palomares Rius; Kaiwen Pan; Vlada Peneva; Loïc Pellissier; Julio Carlos Pereira da Silva; Camille Pitteloud; Thomas O Powers; Kirsten Powers; Casper W Quist; Sergio Rasmann; Sara Sánchez Moreno; Stefan Scheu; Heikki Setälä; Anna Sushchuk; Alexei V Tiunov; Jean Trap; Wim van der Putten; Mette Vestergård; Cecile Villenave; Lieven Waeyenberge; Diana H Wall; Rutger Wilschut; Daniel G Wright; Jiue-In Yang; Thomas Ward Crowther
Journal:  Nature       Date:  2019-07-24       Impact factor: 49.962

5.  Trace gas oxidizers are widespread and active members of soil microbial communities.

Authors:  Sean K Bay; Xiyang Dong; James A Bradley; Pok Man Leung; Rhys Grinter; Thanavit Jirapanjawat; Stefan K Arndt; Perran L M Cook; Douglas E LaRowe; Philipp A Nauer; Eleonora Chiri; Chris Greening
Journal:  Nat Microbiol       Date:  2021-01-04       Impact factor: 17.745

6.  Effect of Amplicon Sequencing Depth in Environmental Microbiome Research.

Authors:  Meganathan P Ramakodi
Journal:  Curr Microbiol       Date:  2021-02-03       Impact factor: 2.188

7.  Dynamic Change in Enzyme Activity and Bacterial Community with long-term rice Cultivation in Mudflats.

Authors:  Yang Zhang; Qing Li; Yinglong Chen; Qigen Dai; Jian Hu
Journal:  Curr Microbiol       Date:  2019-01-25       Impact factor: 2.188

8.  Putting soil invertebrate diversity on the map.

Authors:  Helen R P Phillips; Anna Heintz-Buschart; Nico Eisenhauer
Journal:  Mol Ecol       Date:  2020-02-20       Impact factor: 6.185

9.  Stochastic processes shape the bacterial community assembly in shrimp cultural pond sediments.

Authors:  Dongwei Hou; Renjun Zhou; Shenzheng Zeng; Dongdong Wei; Xisha Deng; Chengguang Xing; Shaoping Weng; Jianguo He; Zhijian Huang
Journal:  Appl Microbiol Biotechnol       Date:  2021-06-07       Impact factor: 4.813

10.  Barks from avocado trees of different geographic locations have consistent microbial communities.

Authors:  Eneas Aguirre-von-Wobeser; Alexandro Alonso-Sánchez; Alfonso Méndez-Bravo; Luis Alberto Villanueva Espino; Frédérique Reverchon
Journal:  Arch Microbiol       Date:  2021-06-23       Impact factor: 2.552

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