Literature DB >> 29347168

Quantifying the entropic cost of cellular growth control.

Daniele De Martino1, Fabrizio Capuani2, Andrea De Martino2,3.   

Abstract

Viewing the ways a living cell can organize its metabolism as the phase space of a physical system, regulation can be seen as the ability to reduce the entropy of that space by selecting specific cellular configurations that are, in some sense, optimal. Here we quantify the amount of regulation required to control a cell's growth rate by a maximum-entropy approach to the space of underlying metabolic phenotypes, where a configuration corresponds to a metabolic flux pattern as described by genome-scale models. We link the mean growth rate achieved by a population of cells to the minimal amount of metabolic regulation needed to achieve it through a phase diagram that highlights how growth suppression can be as costly (in regulatory terms) as growth enhancement. Moreover, we provide an interpretation of the inverse temperature β controlling maximum-entropy distributions based on the underlying growth dynamics. Specifically, we show that the asymptotic value of β for a cell population can be expected to depend on (i) the carrying capacity of the environment, (ii) the initial size of the colony, and (iii) the probability distribution from which the inoculum was sampled. Results obtained for E. coli and human cells are found to be remarkably consistent with empirical evidence.

Entities:  

Year:  2017        PMID: 29347168     DOI: 10.1103/PhysRevE.96.010401

Source DB:  PubMed          Journal:  Phys Rev E        ISSN: 2470-0045            Impact factor:   2.529


  5 in total

1.  Initial cell density encodes proliferative potential in cancer cell populations.

Authors:  Chiara Enrico Bena; Marco Del Giudice; Alice Grob; Thomas Gueudré; Mattia Miotto; Dimitra Gialama; Matteo Osella; Emilia Turco; Francesca Ceroni; Andrea De Martino; Carla Bosia
Journal:  Sci Rep       Date:  2021-03-17       Impact factor: 4.379

2.  Relationship between fitness and heterogeneity in exponentially growing microbial populations.

Authors:  Anna Paola Muntoni; Alfredo Braunstein; Andrea Pagnani; Daniele De Martino; Andrea De Martino
Journal:  Biophys J       Date:  2022-04-14       Impact factor: 3.699

3.  Statistical mechanics for metabolic networks during steady state growth.

Authors:  Daniele De Martino; Anna Mc Andersson; Tobias Bergmiller; Călin C Guet; Gašper Tkačik
Journal:  Nat Commun       Date:  2018-07-30       Impact factor: 14.919

Review 4.  An introduction to the maximum entropy approach and its application to inference problems in biology.

Authors:  Andrea De Martino; Daniele De Martino
Journal:  Heliyon       Date:  2018-04-13

5.  The Empirical Fluctuation Pattern of E. coli Division Control.

Authors:  Jacopo Grilli; Clotilde Cadart; Gabriele Micali; Matteo Osella; Marco Cosentino Lagomarsino
Journal:  Front Microbiol       Date:  2018-07-30       Impact factor: 5.640

  5 in total

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