Literature DB >> 29344493

Comparison of Gene Expression Profiling and Chromosome 3 Analysis by Fluorescent in situ Hybridization and Multiplex Ligation Probe Amplification in Fine-Needle Aspiration Biopsy Specimens of Uveal Melanoma.

Michael A Klufas1, Elizabeth Richter1, Sujit Itty1, Christian Moreno1, Colin A McCannel1,2, Tara A McCannel1,2.   

Abstract

PURPOSE: The aim of this paper was to assess the concordance between results of DecisionDx-UM specific gene expression profiling (GEP) and fluorescence in situ hybridization (FISH) for chromosome 3 analysis, and between DecisionDx-UM GEP and multiplex ligation probe amplification (MLPA) in uveal melanoma undergoing intraoperative fine-needle aspiration biopsy (FNAB) for metastatic prognostication during brachytherapy.
METHODS: We retrospectively reviewed consecutive patients diagnosed with posterior uveal melanoma who underwent intraoperative FNAB prior to placement of an iodine-125 radioactive plaque between 2012 and 2014. Two cohorts of patients were identified: Cohort 1 - tumors in which both GEP and FISH results were obtained, and Cohort 2 - tumors in which both GEP and MLPA results were obtained.
RESULTS: Forty-four patients were identified for Cohort 1. FISH and GEP results were discordant in 7 tumors (15.9%). Forty-three patients were identified for Cohort 2. MLPA and GEP were discordant in 7 tumors (16.3%).
CONCLUSIONS: Discordance between GEP and chromosome 3 status by FISH and MLPA occurred in our series at a rate of 15.9 and 16.3%, respectively. Caution must be advised when counseling a patient with a good-prognosis GEP "Class 1" result that the uveal tumor may actually harbor monosomy 3, which is associated with a poor prognosis for metastasis in nearly 20% of the patients.

Entities:  

Keywords:  Choroidal melanoma; Fine-needle aspiration biopsy; Fluorescent in situ hybridization; Gene expression profiling; Molecular prognostication; Monosomy 3; Multiplex ligation probe amplification; Uveal melanoma

Year:  2017        PMID: 29344493      PMCID: PMC5757548          DOI: 10.1159/000468941

Source DB:  PubMed          Journal:  Ocul Oncol Pathol        ISSN: 2296-4657


  28 in total

1.  Genetic heterogeneity in uveal melanoma assessed by multiplex ligation-dependent probe amplification.

Authors:  Justyna Dopierala; Bertil E Damato; Sarah L Lake; Azzam F G Taktak; Sarah E Coupland
Journal:  Invest Ophthalmol Vis Sci       Date:  2010-05-19       Impact factor: 4.799

2.  Partial deletions of the long and short arm of chromosome 3 point to two tumor suppressor genes in uveal melanoma.

Authors:  F Tschentscher; G Prescher; D E Horsman; V A White; H Rieder; G Anastassiou; H Schilling; N Bornfeld; K U Bartz-Schmidt; B Horsthemke; D R Lohmann; M Zeschnigk
Journal:  Cancer Res       Date:  2001-04-15       Impact factor: 12.701

3.  Uveal melanoma gene expression profile test result provided for uveal metastasis.

Authors:  Michael I Seider; Paul J Stewart; Kavita K Mishra; Bertil E Damato
Journal:  Ophthalmic Surg Lasers Imaging Retina       Date:  2014-08-26       Impact factor: 1.300

4.  Prognostication of Uveal Melanoma: A Work in Progress.

Authors:  Arun D Singh
Journal:  JAMA Ophthalmol       Date:  2016-07-01       Impact factor: 7.389

Review 5.  Recent developments in prognostic and predictive testing in uveal melanoma.

Authors:  Matthew G Field; J William Harbour
Journal:  Curr Opin Ophthalmol       Date:  2014-05       Impact factor: 3.761

6.  Concordant chromosome 3 results in paired choroidal melanoma biopsies and subsequent tumour resection specimens.

Authors:  Sarah E Coupland; Helen Kalirai; Vivian Ho; Sophie Thornton; Bertil E Damato; Heinrich Heimann
Journal:  Br J Ophthalmol       Date:  2015-07-23       Impact factor: 4.638

Review 7.  Fine-needle aspiration biopsy in the management of choroidal melanoma.

Authors:  Tara A McCannel
Journal:  Curr Opin Ophthalmol       Date:  2013-05       Impact factor: 3.761

8.  Prognostic Implications of Tumor Diameter in Association With Gene Expression Profile for Uveal Melanoma.

Authors:  Scott D Walter; Daniel L Chao; William Feuer; Joyce Schiffman; Devron H Char; J William Harbour
Journal:  JAMA Ophthalmol       Date:  2016-07-01       Impact factor: 7.389

9.  Reactions to and desire for prognostic testing in choroidal melanoma patients.

Authors:  Tammy M Beran; Tara A McCannel; Annette L Stanton; Bradley R Straatsma; Barry L Burgess
Journal:  J Genet Couns       Date:  2009-05-07       Impact factor: 2.537

10.  Heterogeneity of monosomy 3 in fine needle aspiration biopsy of choroidal melanoma.

Authors:  Melinda Y Chang; Nagesh P Rao; Barry L Burgess; Lariza Johnson; Tara A McCannel
Journal:  Mol Vis       Date:  2013-09-07       Impact factor: 2.367

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  5 in total

1.  Response to "Comparison of Gene Expression Profiling and Chromosome 3 Analysis by Fluorescent in situ Hybridization and Multiplex Ligation Probe Amplification in Fine-Needle Aspiration Biopsy Specimens of Uveal Melanoma".

Authors:  Kristen M Plasseraud; Federico A Monzon
Journal:  Ocul Oncol Pathol       Date:  2017-09-21

2.  Response to "Comparison of Gene Expression Profiling and Chromosome 3 Analysis by Fluorescent in situ Hybridization and Multiplex Ligation Probe Amplification in Fine-Needle Aspiration Biopsy Specimens of Uveal Melanoma".

Authors:  Michael A Klufas; Tara A McCannel
Journal:  Ocul Oncol Pathol       Date:  2017-11-16

3.  Correlation of Immunocytochemistry of BRCA1-associated Protein-1 (BAP1) With Other Prognostic Markers in Uveal Melanoma.

Authors:  Ben J Glasgow; Tara A McCannel
Journal:  Am J Ophthalmol       Date:  2018-03-09       Impact factor: 5.258

4.  Small Choroidal Melanoma: Correlation between Clinical Characteristics and Metastatic Potential.

Authors:  Shiming Luo; Vishal Raval; Emily C Zabor; Arun D Singh
Journal:  Ocul Oncol Pathol       Date:  2021-09-16

Review 5.  Brachytherapy for patients with uveal melanoma: historical perspectives and future treatment directions.

Authors:  Beatrice Y Brewington; Yusra F Shao; Fredrick H Davidorf; Colleen M Cebulla
Journal:  Clin Ophthalmol       Date:  2018-05-17
  5 in total

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