Literature DB >> 29342355

Convergence of Kirkwood-Buff Integrals of Ideal and Nonideal Aqueous Solutions Using Molecular Dynamics Simulations.

Jasmin Milzetti1, Divya Nayar1, Nico F A van der Vegt1.   

Abstract

The computation of Kirkwood-Buff integrals (KBIs) using molecular simulations of closed systems is challenging due to finite system-size effects. One of the problems involves the incorrect asymptotic behavior of the radial distribution function. Corrections to rectify such effects have been proposed in the literature. This study reports a systematic comparison of the proposed corrections (as given by Ganguly et al. J. Chem. Theory Comput. 2013, 9, 1347-1355 and Krüger et al. J. Phys. Chem. Lett. 2013, 4, 4-7) to assess the asymptotic behavior of the RDFs, the KBIs, as well as the estimation of thermodynamic quantities for ideal urea-water and nonideal modified-urea-water mixtures using molecular dynamics simulations. The results show that applying the KBI correction suggested by Krüger et al. on the RDF corrected with the Ganguly et al. correction (denoted as B-KBI) yields improved KBI convergence for the ideal and nonideal aqueous mixtures. Different averaging regions in the running KBIs (correlated or long-range) are assessed, and averaging over the correlated region for large system sizes is found to be robust toward the change in the degree of solvent nonideality and concentration, providing good estimates of thermodynamic quantities. The study provides new insights into improving the KBI convergence, the suitability of different averaging regions in KBIs to estimate thermodynamic properties, as well as the applicability of correction methods to achieve KBI convergence for nonideal aqueous binary mixtures.

Entities:  

Year:  2018        PMID: 29342355     DOI: 10.1021/acs.jpcb.7b11831

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  7 in total

1.  Finite-Size Effects of Binary Mutual Diffusion Coefficients from Molecular Dynamics.

Authors:  Seyed Hossein Jamali; Ludger Wolff; Tim M Becker; André Bardow; Thijs J H Vlugt; Othonas A Moultos
Journal:  J Chem Theory Comput       Date:  2018-04-30       Impact factor: 6.006

2.  Characterizing Polymer Hydration Shell Compressibilities with the Small-System Method.

Authors:  Madhusmita Tripathy; Swaminath Bharadwaj; Shadrack Jabes B; Nico F A van der Vegt
Journal:  Nanomaterials (Basel)       Date:  2020-07-25       Impact factor: 5.076

3.  Optimizing Nonbonded Interactions of the OPLS Force Field for Aqueous Solutions of Carbohydrates: How to Capture Both Thermodynamics and Dynamics.

Authors:  Seyed Hossein Jamali; Thijs van Westen; Othonas A Moultos; Thijs J H Vlugt
Journal:  J Chem Theory Comput       Date:  2018-11-20       Impact factor: 6.006

4.  Generalized Moment Correction for Long-Ranged Electrostatics.

Authors:  Björn Stenqvist; Vidar Aspelin; Mikael Lund
Journal:  J Chem Theory Comput       Date:  2020-05-07       Impact factor: 6.006

Review 5.  Fluctuations, Finite-Size Effects and the Thermodynamic Limit in Computer Simulations: Revisiting the Spatial Block Analysis Method.

Authors:  Maziar Heidari; Kurt Kremer; Raffaello Potestio; Robinson Cortes-Huerto
Journal:  Entropy (Basel)       Date:  2018-03-24       Impact factor: 2.524

6.  Structural, Thermodynamic, and Transport Properties of Aqueous Reline and Ethaline Solutions from Molecular Dynamics Simulations.

Authors:  Alper T Celebi; Thijs J H Vlugt; Othonas A Moultos
Journal:  J Phys Chem B       Date:  2019-12-12       Impact factor: 2.991

7.  Diffusion in multicomponent aqueous alcoholic mixtures.

Authors:  Gabriela Guevara-Carrion; Robin Fingerhut; Jadran Vrabec
Journal:  Sci Rep       Date:  2021-06-10       Impact factor: 4.379

  7 in total

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