Literature DB >> 29335620

Maternal, dominance and additive genetic effects in Nile tilapia; influence on growth, fillet yield and body size traits.

R Joshi1, J A Woolliams2,3, The Meuwissen2, H M Gjøen2.   

Abstract

There are only few studies of dominance effects in non-inbred aquaculture species, since commonly used mating designs often have low power to separate dominance, maternal and common environmental effects. Here, a factorial design with reciprocal cross, common rearing of eggs and subsequent lifecycle stages and pedigree assignment using DNA microsatellites was used to separate these effects and estimate dominance (d2) and maternal (m2) ratios in Nile tilapia for six commercial traits. The study included observations on 2524 offspring from 155 full-sib families. Substantial contributions of dominance were observed (P < 0.05) for body depth (BD) and body weight at harvest (BWH) with estimates of d2 = 0.27 (s.e. 0.09) and 0.23 (s.e. 0.09), respectively in the current breeding population. In addition the study found maternal variance (P < 0.05) for BD, BWH, body thickness and fillet weight explaining ~10% of the observed phenotypic variance. For fillet yield (FY) and body length (BL), no evidence was found for either maternal or dominance variance. For traits exhibiting maternal variance, including this effect in evaluations caused substantial re-ranking of selection candidates, but the impact of including dominance effects was notably less. Breeding schemes may benefit from utilising maternal variance in increasing accuracy of evaluations, reducing bias, and developing new lines, but the utilisation of the dominance variance may require further refinement of parameter estimates.

Entities:  

Mesh:

Year:  2018        PMID: 29335620      PMCID: PMC5889400          DOI: 10.1038/s41437-017-0046-x

Source DB:  PubMed          Journal:  Heredity (Edinb)        ISSN: 0018-067X            Impact factor:   3.821


  10 in total

1.  GENOTYPIC COVARIANCES BETWEEN INBRED RELATIVES.

Authors:  D L HARRIS
Journal:  Genetics       Date:  1964-12       Impact factor: 4.562

2.  A second-generation genetic linkage map of tilapia (Oreochromis spp.).

Authors:  Bo-Young Lee; Woo-Jai Lee; J Todd Streelman; Karen L Carleton; Aimee E Howe; Gideon Hulata; Audun Slettan; Justin E Stern; Yohey Terai; Thomas D Kocher
Journal:  Genetics       Date:  2005-02-16       Impact factor: 4.562

3.  On the additive and dominant variance and covariance of individuals within the genomic selection scope.

Authors:  Zulma G Vitezica; Luis Varona; Andres Legarra
Journal:  Genetics       Date:  2013-10-11       Impact factor: 4.562

4.  A genetic linkage map of a cichlid fish, the tilapia (Oreochromis niloticus).

Authors:  T D Kocher; W J Lee; H Sobolewska; D Penman; B McAndrew
Journal:  Genetics       Date:  1998-03       Impact factor: 4.562

5.  Unraveling additive from nonadditive effects using genomic relationship matrices.

Authors:  Patricio R Muñoz; Marcio F R Resende; Salvador A Gezan; Marcos Deon Vilela Resende; Gustavo de Los Campos; Matias Kirst; Dudley Huber; Gary F Peter
Journal:  Genetics       Date:  2014-10-15       Impact factor: 4.562

6.  Impact of fitting dominance and additive effects on accuracy of genomic prediction of breeding values in layers.

Authors:  M Heidaritabar; A Wolc; J Arango; J Zeng; P Settar; J E Fulton; N P O'Sullivan; J W M Bastiaansen; R L Fernando; D J Garrick; J C M Dekkers
Journal:  J Anim Breed Genet       Date:  2016-06-30       Impact factor: 2.380

7.  The consequences of including non-additive effects on the genetic evaluation of harvest body weight in Coho salmon (Oncorhynchus kisutch).

Authors:  José A Gallardo; Jean P Lhorente; Roberto Neira
Journal:  Genet Sel Evol       Date:  2010-06-11       Impact factor: 4.297

8.  Estimating additive and non-additive genetic variances and predicting genetic merits using genome-wide dense single nucleotide polymorphism markers.

Authors:  Guosheng Su; Ole F Christensen; Tage Ostersen; Mark Henryon; Mogens S Lund
Journal:  PLoS One       Date:  2012-09-13       Impact factor: 3.240

9.  Including non-additive genetic effects in Bayesian methods for the prediction of genetic values based on genome-wide markers.

Authors:  Dörte Wittenburg; Nina Melzer; Norbert Reinsch
Journal:  BMC Genet       Date:  2011-08-25       Impact factor: 2.797

10.  Improvement of prediction ability for genomic selection of dairy cattle by including dominance effects.

Authors:  Chuanyu Sun; Paul M VanRaden; John B Cole; Jeffrey R O'Connell
Journal:  PLoS One       Date:  2014-08-01       Impact factor: 3.240

  10 in total
  7 in total

1.  Detecting the dominance component of heritability in isolated and outbred human populations.

Authors:  Anthony F Herzig; Teresa Nutile; Daniela Ruggiero; Marina Ciullo; Hervé Perdry; Anne-Louise Leutenegger
Journal:  Sci Rep       Date:  2018-12-21       Impact factor: 4.379

2.  Optimized grouping to increase accuracy of prediction of breeding values based on group records in genomic selection breeding programs.

Authors:  Thinh T Chu; John W M Bastiaansen; Peer Berg; Hans Komen
Journal:  Genet Sel Evol       Date:  2019-11-15       Impact factor: 4.297

3.  The Impact of Non-additive Effects on the Genetic Correlation Between Populations.

Authors:  Pascal Duenk; Piter Bijma; Mario P L Calus; Yvonne C J Wientjes; Julius H J van der Werf
Journal:  G3 (Bethesda)       Date:  2020-02-06       Impact factor: 3.154

4.  Optimum mating designs for exploiting dominance in genomic selection schemes for aquaculture species.

Authors:  Jesús Fernández; Beatriz Villanueva; Miguel Angel Toro
Journal:  Genet Sel Evol       Date:  2021-02-10       Impact factor: 4.297

5.  Bayesian genomic models boost prediction accuracy for survival to Streptococcus agalactiae infection in Nile tilapia (Oreochromus nilioticus).

Authors:  Rajesh Joshi; Anders Skaarud; Alejandro Tola Alvarez; Thomas Moen; Jørgen Ødegård
Journal:  Genet Sel Evol       Date:  2021-04-21       Impact factor: 4.297

6.  Development and Validation of 58K SNP-Array and High-Density Linkage Map in Nile Tilapia (O. niloticus).

Authors:  Rajesh Joshi; Mariann Árnyasi; Sigbjørn Lien; Hans Magnus Gjøen; Alejandro Tola Alvarez; Matthew Kent
Journal:  Front Genet       Date:  2018-10-15       Impact factor: 4.599

7.  An assessment of genomic connectedness measures in Nellore cattle.

Authors:  Sabrina T Amorim; Haipeng Yu; Mehdi Momen; Lúcia Galvão de Albuquerque; Angélica S Cravo Pereira; Fernando Baldi; Gota Morota
Journal:  J Anim Sci       Date:  2020-11-01       Impact factor: 3.159

  7 in total

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