Literature DB >> 29333479

Oral Microbiome Characterization in Murine Models.

Loreto Abusleme1, Bo-Young Hong2, Anilei Hoare2, Joanne E Konkel3,4, Patricia I Diaz2, Niki M Moutsopoulos1.   

Abstract

The oral microbiome has been implicated as a trigger for immune responsiveness in the oral cavity, particularly in the setting of the inflammatory disease periodontitis. The protocol presented here is aimed at characterizing the oral microbiome in murine models at steady state and during perturbations of immunity or physiology. Herein, we describe murine oral microbiome sampling procedures, processing of low biomass samples and subsequent microbiome characterization based on 16S rRNA gene sequencing.

Entities:  

Keywords:  16S rRNA gene sequencing; Gingival microbiome; Microbiome sequencing; Mouse oral sampling; Murine oral microbiota; Oral microbiome

Year:  2017        PMID： 29333479      PMCID： PMC5760993          DOI： 10.21769/BioProtoc.2655

Source DB:  PubMed          Journal:  Bio Protoc        ISSN： 2331-8325


  18 in total

1.  Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy.

Authors:  Qiong Wang; George M Garrity; James M Tiedje; James R Cole
Journal:  Appl Environ Microbiol       Date:  2007-06-22       Impact factor: 4.792

2.  Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform.

Authors:  James J Kozich; Sarah L Westcott; Nielson T Baxter; Sarah K Highlander; Patrick D Schloss
Journal:  Appl Environ Microbiol       Date:  2013-06-21       Impact factor: 4.792

Review 3.  Homeostatic Immunity and the Microbiota.

Authors:  Yasmine Belkaid; Oliver J Harrison
Journal:  Immunity       Date:  2017-04-18       Impact factor: 31.745

4.  An obesity-associated gut microbiome with increased capacity for energy harvest.

Authors:  Peter J Turnbaugh; Ruth E Ley; Michael A Mahowald; Vincent Magrini; Elaine R Mardis; Jeffrey I Gordon
Journal:  Nature       Date:  2006-12-21       Impact factor: 49.962

Review 5.  IL-17: overview and role in oral immunity and microbiome.

Authors:  L Abusleme; N M Moutsopoulos
Journal:  Oral Dis       Date:  2016-12-27       Impact factor: 3.511

6.  Distinct and complex bacterial profiles in human periodontitis and health revealed by 16S pyrosequencing.

Authors:  Ann L Griffen; Clifford J Beall; James H Campbell; Noah D Firestone; Purnima S Kumar; Zamin K Yang; Mircea Podar; Eugene J Leys
Journal:  ISME J       Date:  2011-12-15       Impact factor: 10.302

7.  Induction of intestinal Th17 cells by segmented filamentous bacteria.

Authors:  Ivaylo I Ivanov; Koji Atarashi; Nicolas Manel; Eoin L Brodie; Tatsuichiro Shima; Ulas Karaoz; Dongguang Wei; Katherine C Goldfarb; Clark A Santee; Susan V Lynch; Takeshi Tanoue; Akemi Imaoka; Kikuji Itoh; Kiyoshi Takeda; Yoshinori Umesaki; Kenya Honda; Dan R Littman
Journal:  Cell       Date:  2009-10-30       Impact factor: 41.582

8.  Structure, function and diversity of the healthy human microbiome.

Authors: 
Journal:  Nature       Date:  2012-06-13       Impact factor: 49.962

9.  Metagenomic biomarker discovery and explanation.

Authors:  Nicola Segata; Jacques Izard; Levi Waldron; Dirk Gevers; Larisa Miropolsky; Wendy S Garrett; Curtis Huttenhower
Journal:  Genome Biol       Date:  2011-06-24       Impact factor: 13.583

10.  Bacterial flora-typing with targeted, chip-based Pyrosequencing.

Authors:  Andreas Sundquist; Saharnaz Bigdeli; Roxana Jalili; Maurice L Druzin; Sarah Waller; Kristin M Pullen; Yasser Y El-Sayed; M Mark Taslimi; Serafim Batzoglou; Mostafa Ronaghi
Journal:  BMC Microbiol       Date:  2007-11-30       Impact factor: 3.605
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  19 in total

1.  Establishment and Stability of the Murine Oral Microbiome.

Authors:  L Abusleme; H O'Gorman; N Dutzan; T Greenwell-Wild; N M Moutsopoulos
Journal:  J Dent Res       Date:  2020-04-28       Impact factor: 6.116

Review 2.  An Integrated Approach for Preventing Oral Cavity and Oropharyngeal Cancers: Two Etiologies with Distinct and Shared Mechanisms of Carcinogenesis.

Authors:  Karam El-Bayoumy; Neil D Christensen; Jiafen Hu; Raphael Viscidi; Douglas B Stairs; Vonn Walter; Kun-Ming Chen; Yuan-Wan Sun; Joshua E Muscat; John P Richie
Journal:  Cancer Prev Res (Phila)       Date:  2020-05-20

3.  Effect of Systemic Administration of Amitriptyline on Oral Microbes in Rats.

Authors:  Kazunori Ninomiya; Durga Paudel; Osamu Uehara; Tetsuro Morikawa; Syed Taufiqul Islam; Ariuntsetseg Khurelchuluun; Dedy Ariwansa; Koki Yoshida; Hirofumi Matsuoka; Hara Hajime; Fukui Kayoko; Kenjirou Nakamura; Yoshihiro Abiko
Journal:  In Vivo       Date:  2022 Sep-Oct       Impact factor: 2.406

4.  Loss of the disease-associated glycosyltransferase Galnt3 alters Muc10 glycosylation and the composition of the oral microbiome.

Authors:  Gabriella Peluso; E Tian; Loreto Abusleme; Takashi Munemasa; Taro Mukaibo; Kelly G Ten Hagen
Journal:  J Biol Chem       Date:  2019-12-27       Impact factor: 5.157

5.  A dysbiotic microbiome triggers TH17 cells to mediate oral mucosal immunopathology in mice and humans.

Authors:  Nicolas Dutzan; Tetsuhiro Kajikawa; Loreto Abusleme; Teresa Greenwell-Wild; Carlos E Zuazo; Tomoko Ikeuchi; Laurie Brenchley; Toshiharu Abe; Charlotte Hurabielle; Daniel Martin; Robert J Morell; Alexandra F Freeman; Vanja Lazarevic; Giorgio Trinchieri; Patricia I Diaz; Steven M Holland; Yasmine Belkaid; George Hajishengallis; Niki M Moutsopoulos
Journal:  Sci Transl Med       Date:  2018-10-17       Impact factor: 17.956

6.  Candida albicans induces mucosal bacterial dysbiosis that promotes invasive infection.

Authors:  Martinna Bertolini; Amit Ranjan; Angela Thompson; Patricia I Diaz; Takanori Sobue; Kendra Maas; Anna Dongari-Bagtzoglou
Journal:  PLoS Pathog       Date:  2019-04-22       Impact factor: 7.464

7.  Exploring the microbiota of upper respiratory tract during the development of pneumonia in a mouse model.

Authors:  Yoshitomo Morinaga; Yuki Take; Daisuke Sasaki; Kenji Ota; Norihito Kaku; Naoki Uno; Kei Sakamoto; Kosuke Kosai; Taiga Miyazaki; Hiroo Hasegawa; Koichi Izumikawa; Hiroshi Mukae; Katsunori Yanagihara
Journal:  PLoS One       Date:  2019-09-27       Impact factor: 3.240

8.  Dysregulation of Intestinal Microbiota Elicited by Food Allergy Induces IgA-Mediated Oral Dysbiosis.

Authors:  Shohei Matsui; Hideo Kataoka; Jun-Ichi Tanaka; Mariko Kikuchi; Haruka Fukamachi; Hirobumi Morisaki; Hitomi Matsushima; Kenji Mishima; Shoji Hironaka; Takashi Takaki; Nobuo Okahashi; Yasubumi Maruoka; Hirotaka Kuwata
Journal:  Infect Immun       Date:  2019-12-17       Impact factor: 3.441

Review 9.  Humanized Mouse Models for the Study of Periodontitis: An Opportunity to Elucidate Unresolved Aspects of Its Immunopathogenesis and Analyze New Immunotherapeutic Strategies.

Authors:  Carolina Rojas; Michelle P García; Alan F Polanco; Luis González-Osuna; Alfredo Sierra-Cristancho; Samanta Melgar-Rodríguez; Emilio A Cafferata; Rolando Vernal
Journal:  Front Immunol       Date:  2021-06-17       Impact factor: 7.561

10.  The Oral Mouse Microbiome Promotes Tumorigenesis in Oral Squamous Cell Carcinoma.

Authors:  Philip Stashenko; Susan Yost; Yoonhee Choi; Theodora Danciu; Tsute Chen; Subbiah Yoganathan; Christine Kressirer; Montserrat Ruiz-Tourrella; Bikul Das; Alexis Kokaras; Jorge Frias-Lopez
Journal:  mSystems       Date:  2019-08-06       Impact factor: 6.496
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