Literature DB >> 29330365

Engineered nanointerfaces for microfluidic isolation and molecular profiling of tumor-specific extracellular vesicles.

Eduardo Reátegui1,2,3,4,5,6, Kristan E van der Vos7,8, Charles P Lai7,9, Mahnaz Zeinali1,2,3,4, Nadia A Atai7, Berent Aldikacti1,2,4, Frederick P Floyd1,2,3, Aimal H Khankhel1,2,3, Vishal Thapar4, Fred H Hochberg10, Lecia V Sequist4,11, Brian V Nahed4,12, Bob S Carter10, Mehmet Toner1,2,3,5, Leonora Balaj7, David T Ting4, Xandra O Breakefield7,13, Shannon L Stott14,15,16,17,18,19.   

Abstract

Extracellular vesicles (EVs) carry RNA, DNA, proteins, and lipids. Specifically, tumor-derived EVs have the potential to be utilized as disease-specific biomarkers. However, a lack of methods to isolate tumor-specific EVs has limited their use in clinical settings. Here we report a sensitive analytical microfluidic platform (EVHB-Chip) that enables tumor-specific EV-RNA isolation within 3 h. Using the EVHB-Chip, we achieve 94% tumor-EV specificity, a limit of detection of 100 EVs per μL, and a 10-fold increase in tumor RNA enrichment in comparison to other methods. Our approach allows for the subsequent release of captured tumor EVs, enabling downstream characterization and functional studies. Processing serum and plasma samples from glioblastoma multiforme (GBM) patients, we can detect the mutant EGFRvIII mRNA. Moreover, using next-generation RNA sequencing, we identify genes specific to GBM as well as transcripts that are hallmarks for the four genetic subtypes of the disease.

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Year:  2018        PMID: 29330365      PMCID: PMC5766611          DOI: 10.1038/s41467-017-02261-1

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  53 in total

1.  Chaotic mixer for microchannels.

Authors:  Abraham D Stroock; Stephan K W Dertinger; Armand Ajdari; Igor Mezic; Howard A Stone; George M Whitesides
Journal:  Science       Date:  2002-01-25       Impact factor: 47.728

2.  Isolation and characterization of exosomes from cell culture supernatants and biological fluids.

Authors:  Clotilde Théry; Sebastian Amigorena; Graça Raposo; Aled Clayton
Journal:  Curr Protoc Cell Biol       Date:  2006-04

3.  Nanoscale lateral displacement arrays for the separation of exosomes and colloids down to 20 nm.

Authors:  Benjamin H Wunsch; Joshua T Smith; Stacey M Gifford; Chao Wang; Markus Brink; Robert L Bruce; Robert H Austin; Gustavo Stolovitzky; Yann Astier
Journal:  Nat Nanotechnol       Date:  2016-08-01       Impact factor: 39.213

4.  Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma.

Authors:  Anoop P Patel; Itay Tirosh; John J Trombetta; Alex K Shalek; Shawn M Gillespie; Hiroaki Wakimoto; Daniel P Cahill; Brian V Nahed; William T Curry; Robert L Martuza; David N Louis; Orit Rozenblatt-Rosen; Mario L Suvà; Aviv Regev; Bradley E Bernstein
Journal:  Science       Date:  2014-06-12       Impact factor: 47.728

5.  Tunable nanostructured coating for the capture and selective release of viable circulating tumor cells.

Authors:  Eduardo Reátegui; Nicola Aceto; Eugene J Lim; James P Sullivan; Anne E Jensen; Mahnaz Zeinali; Joseph M Martel; Alexander J Aranyosi; Wei Li; Steven Castleberry; Aditya Bardia; Lecia V Sequist; Daniel A Haber; Shyamala Maheswaran; Paula T Hammond; Mehmet Toner; Shannon L Stott
Journal:  Adv Mater       Date:  2015-01-15       Impact factor: 30.849

6.  Visualization and tracking of tumour extracellular vesicle delivery and RNA translation using multiplexed reporters.

Authors:  Charles P Lai; Edward Y Kim; Christian E Badr; Ralph Weissleder; Thorsten R Mempel; Bakhos A Tannous; Xandra O Breakefield
Journal:  Nat Commun       Date:  2015-05-13       Impact factor: 14.919

7.  HTSeq--a Python framework to work with high-throughput sequencing data.

Authors:  Simon Anders; Paul Theodor Pyl; Wolfgang Huber
Journal:  Bioinformatics       Date:  2014-09-25       Impact factor: 6.937

8.  Detection of T790M, the Acquired Resistance EGFR Mutation, by Tumor Biopsy versus Noninvasive Blood-Based Analyses.

Authors:  Tilak K Sundaresan; Lecia V Sequist; John V Heymach; Gregory J Riely; Pasi A Jänne; Walter H Koch; James P Sullivan; Douglas B Fox; Robert Maher; Alona Muzikansky; Andrew Webb; Hai T Tran; Uma Giri; Martin Fleisher; Helena A Yu; Wen Wei; Bruce E Johnson; Thomas A Barber; John R Walsh; Jeffrey A Engelman; Shannon L Stott; Ravi Kapur; Shyamala Maheswaran; Mehmet Toner; Daniel A Haber
Journal:  Clin Cancer Res       Date:  2015-10-07       Impact factor: 12.531

9.  High levels of exosomes expressing CD63 and caveolin-1 in plasma of melanoma patients.

Authors:  Mariantonia Logozzi; Angelo De Milito; Luana Lugini; Martina Borghi; Luana Calabrò; Massimo Spada; Maurizio Perdicchio; Maria Lucia Marino; Cristina Federici; Elisabetta Iessi; Daria Brambilla; Giulietta Venturi; Francesco Lozupone; Mario Santinami; Veronica Huber; Michele Maio; Licia Rivoltini; Stefano Fais
Journal:  PLoS One       Date:  2009-04-17       Impact factor: 3.240

10.  Chip-based analysis of exosomal mRNA mediating drug resistance in glioblastoma.

Authors:  Huilin Shao; Jaehoon Chung; Kyungheon Lee; Leonora Balaj; Changwook Min; Bob S Carter; Fred H Hochberg; Xandra O Breakefield; Hakho Lee; Ralph Weissleder
Journal:  Nat Commun       Date:  2015-05-11       Impact factor: 14.919

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  69 in total

1.  Frontiers in Intravital Multiphoton Microscopy of Cancer.

Authors:  Louisiane Perrin; Battuya Bayarmagnai; Bojana Gligorijevic
Journal:  Cancer Rep (Hoboken)       Date:  2019-06-20

2.  Bio-Inspired NanoVilli Chips for Enhanced Capture of Tumor-Derived Extracellular Vesicles: Toward Non-Invasive Detection of Gene Alterations in Non-Small Cell Lung Cancer.

Authors:  Jiantong Dong; Ryan Y Zhang; Na Sun; Matthew Smalley; Zipeng Wu; Anqi Zhou; Shih-Jie Chou; Yu Jen Jan; Peng Yang; Lirong Bao; Dongping Qi; Xinghong Tang; Patrick Tseng; Yue Hua; Dianwen Xu; Rueihung Kao; Meng Meng; Xirun Zheng; Ying Liu; Tatyana Vagner; Xiaoshu Chai; Dongjing Zhou; Mengyuan Li; Shih-Hwa Chiou; Guangjuan Zheng; Dolores Di Vizio; Vatche G Agopian; Edwin Posadas; Steven J Jonas; Shin-Pon Ju; Paul S Weiss; Meiping Zhao; Hsian-Rong Tseng; Yazhen Zhu
Journal:  ACS Appl Mater Interfaces       Date:  2019-04-02       Impact factor: 9.229

Review 3.  Liquid biopsies in pancreatic cancer.

Authors:  Nabiollah Kamyabi; Vincent Bernard; Anirban Maitra
Journal:  Expert Rev Anticancer Ther       Date:  2019-09-26       Impact factor: 4.512

4.  Microfluidic on-demand engineering of exosomes towards cancer immunotherapy.

Authors:  Zheng Zhao; Jodi McGill; Pamela Gamero-Kubota; Mei He
Journal:  Lab Chip       Date:  2019-05-14       Impact factor: 6.799

Review 5.  The biological functions and clinical applications of exosomes in lung cancer.

Authors:  Rui Chen; Xin Xu; Zijun Qian; Congcong Zhang; Yongjie Niu; Zhixian Wang; Jianli Sun; Xiao Zhang; Yongchun Yu
Journal:  Cell Mol Life Sci       Date:  2019-07-27       Impact factor: 9.261

6.  Ultrasensitive quantification of tumor mRNAs in extracellular vesicles with an integrated microfluidic digital analysis chip.

Authors:  Peng Zhang; Jennifer Crow; Divya Lella; Xin Zhou; Glenson Samuel; Andrew K Godwin; Yong Zeng
Journal:  Lab Chip       Date:  2018-12-04       Impact factor: 6.799

7.  Analysis of circulating non-coding RNAs in a non-invasive and cost-effective manner.

Authors:  Yu-Min Wang; Michael Patrick Trinh; Yongzan Zheng; Kaizhu Guo; Luis A Jimenez; Wenwan Zhong
Journal:  Trends Analyt Chem       Date:  2019-07-05       Impact factor: 12.296

8.  Coupling Nanostructured Microchips with Covalent Chemistry Enables Purification of Sarcoma-Derived Extracellular Vesicles for Downstream Functional Studies.

Authors:  Jiantong Dong; Ryan Y Zhang; Na Sun; Junhui Hu; Matthew D Smalley; Anqi Zhou; Hua Yue; Winston Rothermich; Mengxiang Chen; Jiayuan Chen; Jinglei Ye; Pai-Chi Teng; Dongping Qi; Jeffrey A Toretsky; James S Tomlinson; Mengyuan Li; Paul S Weiss; Steven J Jonas; Noah Federman; Lily Wu; Meiping Zhao; Hsian-Rong Tseng; Yazhen Zhu
Journal:  Adv Funct Mater       Date:  2020-09-13       Impact factor: 18.808

9.  Exploring Predictors of Response to Dacomitinib in EGFR-Amplified Recurrent Glioblastoma.

Authors:  Andrew S Chi; Daniel P Cahill; David A Reardon; Patrick Y Wen; Tom Mikkelsen; David M Peereboom; Eric T Wong; Elizabeth R Gerstner; Jorg Dietrich; Scott R Plotkin; Andrew D Norden; Eudocia Q Lee; Lakshmi Nayak; Shota Tanaka; Hiroaki Wakimoto; Nina Lelic; Mara V Koerner; Lindsay K Klofas; Mia S Bertalan; Isabel C Arrillaga-Romany; Rebecca A Betensky; William T Curry; Darrel R Borger; Leonora Balaj; Robert R Kitchen; Sudipto K Chakrabortty; Michael D Valentino; Johan Skog; Xandra O Breakefield; A John Iafrate; Tracy T Batchelor
Journal:  JCO Precis Oncol       Date:  2020-06-08

Review 10.  New Technologies for Analysis of Extracellular Vesicles.

Authors:  Huilin Shao; Hyungsoon Im; Cesar M Castro; Xandra Breakefield; Ralph Weissleder; Hakho Lee
Journal:  Chem Rev       Date:  2018-01-31       Impact factor: 60.622

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