Literature DB >> 29330328

Assembling a Cellular User Manual for the Brain.

Steven A Sloan1, Ben A Barres2.   

Abstract

For many years, efforts to decipher the various cellular components that comprise the CNS were stymied by a lack of technical strategies for isolating and profiling the brain's resident cell types. The advent of transcriptional profiling, combined with powerful new purification schemes, changed this reality and transformed our understanding of the macroglial populations within the brain. Here, we chronicle the historical context and scientific setting for our efforts to transcriptionally profile neurons, astrocytes, and oligodendrocytes, and highlight some of the profound discoveries that were cultivated by these data.Following a lengthy battle with pancreatic cancer, Ben Barres passed away during the writing of this Progression piece. Among Ben's innumerable contributions to the greater scientific community, his addition of publicly available transcriptome databases of CNS cell types will forever remain a relic of his generous spirit and boundless scientific curiosity. Although he had impressively committed a majority of these enormous gene lists to memory, Ben could oftentimes be spotted at meetings buried in his cell phone on the Barres RNAseq database. Perhaps the only thing he enjoyed more than exploring these data himself, was knowing how useful these contributions had been (and will hopefully continue to be) to his scientific peers.
Copyright © 2018 the authors 0270-6474/18/383149-05$15.00/0.

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Year:  2018        PMID: 29330328      PMCID: PMC5884454          DOI: 10.1523/JNEUROSCI.2479-17.2018

Source DB:  PubMed          Journal:  J Neurosci        ISSN: 0270-6474            Impact factor:   6.167


  25 in total

1.  Cell death and control of cell survival in the oligodendrocyte lineage.

Authors:  B A Barres; I K Hart; H S Coles; J F Burne; J T Voyvodic; W D Richardson; M C Raff
Journal:  Cell       Date:  1992-07-10       Impact factor: 41.582

Review 2.  Probing the transcriptome of neuronal cell types.

Authors:  Sacha B Nelson; Chris Hempel; Ken Sugino
Journal:  Curr Opin Neurobiol       Date:  2006-09-07       Impact factor: 6.627

3.  An RNA-sequencing transcriptome and splicing database of glia, neurons, and vascular cells of the cerebral cortex.

Authors:  Ye Zhang; Kenian Chen; Steven A Sloan; Mariko L Bennett; Anja R Scholze; Sean O'Keeffe; Hemali P Phatnani; Paolo Guarnieri; Christine Caneda; Nadine Ruderisch; Shuyun Deng; Shane A Liddelow; Chaolin Zhang; Richard Daneman; Tom Maniatis; Ben A Barres; Jian Qian Wu
Journal:  J Neurosci       Date:  2014-09-03       Impact factor: 6.167

4.  Human Astrocyte Maturation Captured in 3D Cerebral Cortical Spheroids Derived from Pluripotent Stem Cells.

Authors:  Steven A Sloan; Spyros Darmanis; Nina Huber; Themasap A Khan; Fikri Birey; Christine Caneda; Richard Reimer; Stephen R Quake; Ben A Barres; Sergiu P Paşca
Journal:  Neuron       Date:  2017-08-16       Impact factor: 17.173

5.  Quantitative monitoring of gene expression patterns with a complementary DNA microarray.

Authors:  M Schena; D Shalon; R W Davis; P O Brown
Journal:  Science       Date:  1995-10-20       Impact factor: 47.728

6.  Neuronal subtype-specific genes that control corticospinal motor neuron development in vivo.

Authors:  Paola Arlotta; Bradley J Molyneaux; Jinhui Chen; Jun Inoue; Ryo Kominami; Jeffrey D Macklis
Journal:  Neuron       Date:  2005-01-20       Impact factor: 17.173

7.  New tools for studying microglia in the mouse and human CNS.

Authors:  Mariko L Bennett; F Chris Bennett; Shane A Liddelow; Bahareh Ajami; Jennifer L Zamanian; Nathaniel B Fernhoff; Sara B Mulinyawe; Christopher J Bohlen; Aykezar Adil; Andrew Tucker; Irving L Weissman; Edward F Chang; Gordon Li; Gerald A Grant; Melanie G Hayden Gephart; Ben A Barres
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-16       Impact factor: 11.205

8.  A gene expression atlas of the central nervous system based on bacterial artificial chromosomes.

Authors:  Shiaoching Gong; Chen Zheng; Martin L Doughty; Kasia Losos; Nicholas Didkovsky; Uta B Schambra; Norma J Nowak; Alexandra Joyner; Gabrielle Leblanc; Mary E Hatten; Nathaniel Heintz
Journal:  Nature       Date:  2003-10-30       Impact factor: 49.962

9.  A survey of human brain transcriptome diversity at the single cell level.

Authors:  Spyros Darmanis; Steven A Sloan; Ye Zhang; Martin Enge; Christine Caneda; Lawrence M Shuer; Melanie G Hayden Gephart; Ben A Barres; Stephen R Quake
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-18       Impact factor: 11.205

10.  Normal aging induces A1-like astrocyte reactivity.

Authors:  Laura E Clarke; Shane A Liddelow; Chandrani Chakraborty; Alexandra E Münch; Myriam Heiman; Ben A Barres
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-07       Impact factor: 11.205

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  3 in total

Review 1.  Functional Consequences of Calcium-Dependent Synapse-to-Nucleus Communication: Focus on Transcription-Dependent Metabolic Plasticity.

Authors:  Anna M Hagenston; Hilmar Bading; Carlos Bas-Orth
Journal:  Cold Spring Harb Perspect Biol       Date:  2020-04-01       Impact factor: 10.005

Review 2.  Neuroinflammatory contribution of microglia and astrocytes in fetal alcohol spectrum disorders.

Authors:  Cynthia J M Kane; Paul D Drew
Journal:  J Neurosci Res       Date:  2020-09-22       Impact factor: 4.164

Review 3.  Suppressing immunotherapy by organ-specific tumor microenvironments: what is in the brain?

Authors:  Chenyu Zhang; Dihua Yu
Journal:  Cell Biosci       Date:  2019-10-07       Impact factor: 7.133

  3 in total

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