| Literature DB >> 29321868 |
Yufa Luo1, Ingi Agnarsson2,3.
Abstract
The Asian citrus psyllid Diaphorina citri Kuwayama is a key pest of citrus as the vector of the bacterium causing the "huanglongbing" disease (HLB). To assess the global mtDNA population genetic structure, and possible dispersal history of the pest, we investigated genetic variation at the COI gene collating newly collected samples with all previously published data. Our dataset consists of 356 colonies from 106 geographic sites worldwide. High haplotype diversity (H-mean = 0.702 ± 0.017), low nucleotide diversity (π-mean = 0.003), and significant positive selection (Ka/Ks = 32.92) were observed. Forty-four haplotypes (Hap) were identified, clustered into two matrilines: Both occur in southeastern and southern Asia, North and South America, and Africa; lineages A and B also occur in eastern and western Asia, respectively. The most abundant haplotypes were Hap4 in lineage A (35.67%), and Hap9 in lineage B (41.29%). The haplotype network identified them as the ancestral haplotypes within their respective lineages. Analysis of molecular variance showed significant genetic structure (FST = 0.62, p < .0001) between the lineages, and population genetic analysis suggests geographic structuring. We hypothesize a southern and/or southeastern Asia origin, three dispersal routes, and parallel expansions of two lineages. The hypothesized first route involved the expansion of lineage B from southern Asia into North America via West Asia. The second, the expansion of some lineage A individuals from Southeast Asia into East Asia, and the third involved both lineages from Southeast Asia spreading westward into Africa and subsequently into South America. To test these hypotheses and gain a deeper understanding of the global history of D. citri, more data-rich approaches will be necessary from the ample toolkit of next-generation sequencing (NGS). However, this study may serve to guide such sampling and in the development of biological control programs against the global pest D. citri.Entities:
Keywords: Asian citrus psyllid; biological control; global genetic structure; invasion history; phylogeography
Year: 2017 PMID: 29321868 PMCID: PMC5756889 DOI: 10.1002/ece3.3680
Source DB: PubMed Journal: Ecol Evol ISSN: 2045-7758 Impact factor: 2.912
Figure 1A photograph of Diaphorina citri Kuwayama female adult
Figure 2Haplotype network derived from partial sequences of the gene from the global Diaphorina citri populations, built using PopART program. Circle size is proportional to haplotype frequency. SA, South Asia; WA, West Asia; SEA, Southeast Asia; EA, East Asia; NM, North America; SM, South America; AF, Africa
Figure 3(a) Sampling regions of the Asian citrus psyllid. Detailed sampling information is presented in Table S1 in Appendix S1. A proposed scenario of early dispersal routes is illustrated with arrows. (b) Assignment of 356 individuals to K = 2 genetic clusters inferred from STRUCTURE simulations using the mitochondrial gene sequences. Green represents the lineage A; Red represents the lineage B
Region, country of collections, number of individuals, haplotypes (number of individuals), and nucleotide and haplotype diversity of Diaphorina citri in each sampled region
| Region | Country of collections | Number of individuals | Haplotypes (number of individuals) | Nucleotide diversity (H) | Haplotype diversity ± |
|---|---|---|---|---|---|
| South Asia | India, Pakistan | 14 | H4(1), H5(4) H8(1), H9(8) | 0.00128 | 0.641 ± 0.097 |
| West Asia | Iran, Saudi Arabia | 15 | H9(15) | 0.00000 | 0.000 ± 0.000 |
| Southeast Asia | Vietnam, Thailand, Indonesia | 30 | H4(27), H9(3) | 0.00057 | 0.186 ± 0.088 |
| East Asia | China | 69 | H4(65), H6(1), H7(3) | 0.00040 | 0.191 ± 0.063 |
| North America | USA, Mexico, Guadeloupe, Puerto Rico | 133 | H1(1), H9(116), H12(1), H13(1), H14(11), H15(3) | 0.00169 | 0.307 ± 0.050 |
| South America | Brazil | 86 | H2(1), H3(1), H4(26), H9(4), H10(1), H11(1), H16(1), H17(4), H18(1), H19(7), H20(3), H21(1), H22(4), H23(1), H24(1), H25(1), H26(1), H27(1), H28(1), H29(4), H30(1), H31(1), H32(7), H33(1), H34(1), H35(1), H36(1), H37(1), H38(1), H39(1), H40(1), H41(1), H42(1), H43(1), H44(1) | 0.00537 | 0.892 ± 0.027 |
| Africa | Reunion, Mauritius | 9 | H4(8), H9(1) | 0.00068 | 0.222 ± 0.166 |
Analysis of molecular variance (AMOVA) for Diaphorina citri samples using COI sequences
| Source of variation |
| Sum of squares | Variance components | Percentage of variation |
|---|---|---|---|---|
| The whole sample | ||||
| Among populations | 6 | 115.13 | 0.42 | 49.72 |
| Within populations | 349 | 148.12 | 0.42 | 50.28 |
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| Two lineages | ||||
| Among lineages | 1 | 99.18 | 0.49 | 47.72 |
| Among populations within lineages | 10 | 30.49 | 0.14 | 14.16 |
| Within lineages | 344 | 133.58 | 0.39 | 38.12 |
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Figure 4Mismatch distributions of Diaphorina citri from the whole sample (a), and from lineage A (b) and B (c) independently